RNA id: AMCG00006163


Basic Information

Item Value
RNA id AMCG00006163
length 6909
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00006163
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17984542 ~ 17998071 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAGCAAATTCAACACACTAAACTCAGAACTCACTATAAACCCTGTTCATTTCAGATTCATGGCTGTGGAAAGCTAGCTGTGTCGGAATCTGAGAATATGGCAAACAGTTCAATTTCAGAAGCACCCAGTGACGCTGGAAGCAAAGTGGAAATGGTGTTCTGGCTGTTGTCTATGTTGGCCACCCGGGACCGGGAGGAGATGTCCCGTACTCTGTTGACCATGTCCAGCTCCCAGGAGAGCTGCTTGGCCATGCGCAAGTCAGGCTGTGTCCCTCTGCTGGTACAGATCCTACACGATGCGGCCGGGACAGGAGAGGTGGGGGCTGGGGGCAGTGGGGGCTGCAGCCGGGAGGCCCGATCCCGAGCTAGTGCCGCCCTGCACAACATTGTCTACTCCCAGCCTGATGAGGGACAGGCCCGCCGGGAGATGAGAGTCCTGCACGTCCTGGAGCAGATCCGCGCCCAATGCGAAGCTGGCTGGGACTGGCTGGAGAATCACTGTGGGCCCCAGGGGCAAGAGGAGTGCAAAACCACAAGTTTCTCCGCTGTCCCTGAACCAGTGGAGCCCCAGATCTGCCAGGCCATGTGTGCAGTCATGAAGCTCTCCTTCGAGGAAGAGTATCGCAGAGCCATGAACGAGCTTGGTGGTCTGCAGGCAGTAGCAGAGCTAATGCAGCTGGACCAGGAGCTCTATGGGATGCAGAATGACCCGCTCAACATGGCACTGCGGCGCTATGCGGGCATGACCCTCACCAACCTCACCTTTGGGGACGTGGTCAACAAAGCCACCTTGTGCTCCAAGAAAAGCTGCCTGCAGGCTATTGTTGCTCAGCTTGCATCTGACAGTGAGGAACTGCATCAGGTAGTCTCCAGTATTCTGAGAAACTTGTCGTGGCGAGCTGACATCAACAGCAAGAAGATCCTTCGAGAAGTGGGAAGTGTGACAGCGCTGATGACCTGTGCTCTACAGGCCACTAAGGAGTCCACTCTTAAAAGCTTGCTCAGTGCCTTGTGGAACCTGTCAGcacacagcactgaaaacaaGGTGGCTATCTgctctgtggatggggcattagGCTTCCTGGTGAGCACACTCACCTATAAGTGTCAAAGCAACTCTCTGGCCATCATAGAGAGTGGTGGGGGAATCCTGCGCAATGTGTCCAGCCTGGTGGCCACCCGAGATGATTATAGgcAAATCCTCAGAGACCACAATTGTCTACAGACTCTCCTGCAGCACCTAAGGTCCCACAGCCTCACTATTGTGAGCAATGCATGTGGGACTCTATGGAACCTGTCTGCTCGTAGCCCTAAGGACCAGGAGCTGCTGTGGGACTTGGGGGCAGTTAGCATGCTGCGCAACCTCATCCACTCCAAGCACAAAATGATCGCCATGGGCAGCGCTGCAGCCCTCAGGAACCTCCTCACCAATAGGCCCCTCAAGTACAAAGATGCTGCAGTCATCTCTCCTGGGTCCTGTATGCCTTCCCTATACATGAGGAAACAGAAGGCCCTGGAGGCTGAGCTGGATGCCAAACACTTAGCGGAGACCTTCGACTCCATTGAGAAGCAGCAGAGTCCCAAGCATCCCAACATCAACAAGCCACTGCGCCACATTGAGAGCCTGGCTAAAGACTACGCCTCCGACTCGGGCTGCTTCGACGATGACGAAGCGCCCCATGTCTCCACAAGCCTGGACACGGGGAGCTTCTCTATGCTCTCCATGTTCCTCAACTCCTCCAACTTCCTCCAAGGCCAGTCCCGCAAGAAGGGCAGTGAGCCTGAAAGAGACGTGGACCCGCAAGTTGAAGATGGCAAGAAGCTCCCGCCTGTGGATGATGAAGTATCTGTGGCAGCGGAGAAACTGGCCAAAAAGATCACCAACACAGTGGCCAAGATTGATAAGCTTGTGGAGGACATCACCATGCACACATCATCAGAAGACAGTTTTAGCCTTAGTTCTGAAGATCACTTTGTTGACTGGCACTATGGATCAGATGAGCTCCACGAAGCCAGGGCTAAGTCCTGCTCCCCCTGCCGTCTTTCAGACACCAGCAGCTTTGCCCGTCGAGAACGCCTCAGCAGGGCCCATGCTCTCCTGCGGCTCAAGACGGCTTATACCAGTTTATCTACGGACAGCCTAAACAGTGGAAGCACCAGCGATGGCTACTGTGGCAGCAAAGACCAAGTCAGGCCCTCTGCCAGATCGGCCACTGTGCAAAGGCGTCCCAACAGGTTGGATTTAAAGGTGGCCCAGCAAGGCTATATGGATAAGGATGACCAATGTGTTCCAACAGAGACAATCCAGAAAGATGTGAAGGAGAGGGGCTCTGAGAATAGTGGTGAAGTGGGCATGAAAAGCCGGAGGAACATAGCTGAAATTGAGAAAGTCCAAGAACCACCACCAACACCAGCAACTGTCAAACACTCTGAAGCCAGTGTGCCCACTATAAAACTCTCCCCCTCCTATCAGCATGTTCCCTTAATTCAGAGTGTGGCTAAGTTTGGTGTTCCCAGGAATCCCATTTCCTCTCAGGCAACTCAAGGGGTGAGGAGACAAGCCTGGATCCCCGCTGTACCAACAACTGGGAGCATAACCAAGATGTCTCCAATGAGCTCTGCCCGGAGCCCTACTCTTGGGCAGCTAGAGACCTTACAGAAGTACTCGGTTGAGAACACACCAATATGTTTCTCTCGCTGCAGCTCTCTATCCTCACTGTCCTCTGGGGATGGAGCTCTGGATGGGCAGAGTCAGAGTGAAAATGAATTAGAGAGTGACTCATCACTGGAGATAATTGAAGTAGAAGAATGTGATCTGGATAAAGGGCATGAAGAGAACTTGGAAGACTTCAGTGAAGGTCAACCGGTGGCCCCAGAGTTTGTCAGCACCACCAGCCCTACTTCCCAACCCATTGAGATCCCCTGCCCTGCCAAACGAGAAAAAGTCTTCCTGAGGGGGGTGTCTCCTGGCAGACATGAAGACATGACCCCATCCAGTTCTTCTGAAAACTACATCCATGAGACCCCACTTGTGATGAGCCGCTGCAGCTCTGTGAGCTCTCTTGGTAGCTTTGAGTCACCCTCCATAGCCAGCTCTATACAGAGTGACCCGTGCAGTGAGATGATCAGTGGCACCATTAGCCCAAGTGATCTACCAGACAGCCCAGGCCAGACCATGCCCCCGAGTCGCAGCAAGACTCCTTGTTGTGTAGACCCGAGTGGTCAGGAGACCCAGACTGGAGGAGGACAGTGGGAGAGTAACCTCCGCAAGTTTATGGAGATTGCCGACTTCAAGGAAAGGTTCAACTTGCCGCCAGACTTGGATACCATGATCTACTTTACTGTGGAAAAGCCCACCGAGAACTTCTCATGCGCCTCTAGTCTCAGCGCCCTGCCTCTTCATGAGCATTACATCCAGAAAGATGTGGAGCTCAAGCTGATGCCCCTGCTCCATGAAAAAGACAACCCTACTTTTagcacagcagagagagaagagatggGGGAAGAGCACCATCTATTTGGGCTTGAGAATCAGGGAGATGGATATGGGGAGGGCAACTCTGATGATGACATAGAAATCCTTAAAGAATGCATTAACTCAGCCATGCCTTCTAAATTCAGGAAGGTTAAGACTTCTTTGATGTCTAGCCTCTCTACCCAAGTCCTAAACTCACAAGCTCGAAAGTCTATGCAGCTGCCTGTCTATATGTTACTTCCTGCTCAAACCAATCAGATGTGTGCAGGGAGTAAGTCTGGAAGGCCTGATAAAGACTATTACCATGACGATTCCTCATTTACTGATTCACCTGAAGGCACTCCTGTGAATTTCTCAAGCACTACATCCCTGAGTGATGAAACACTTCAATACCCAGTAAAGGAGGAGAAAGGCATGAAGGACTGGCGGCCCCGAAGAATGGACAAACAGGACCTTATGGCTTCGCAAGCAAAGAGAATTGATGATCTCCGTTCCTTCTCCCAATTCCATAAGCCTGCCAAACTGCTTGGTCAGGCTGACACAGTAACTAACCAAGTAAACCGAGTTATCAAGAGAGTAATGCCCACACAAGGAGTGCAGCTGAACAATAAAGATGTAACAGCCTCCATTGCTCAGCTCAGAAGTAGAGAACATTCACCCAGTCATCTGATCCAAAGACGGGAGCAGAGCCAGCAAAGGAACATGCCAAAGCTAGACCTACCCATCAGGAAGCAGAGTGGAGAGATTAACCAGAGCCAGAAAACTATTTATGGAGAATATGTGCATGGTAACTTGGCATTTCAATCTATGCGTCACACAACACCCACTGAGGAAgccatttattgtttttatgatgaCCAGGTggacacaaagagagaggaagaaaggatTACAAACACTGGGAGAAAGCAAATTAAGGAGGCTAACAGGAATCTTTTGGCACATGCTGCAGCCAATGCAGAGAGGGGCCTTAATCTCCAGTCAAGGCACAAGGGTGTGTCTAATAAGATAAAGCACAATCTGATCATGGATGAGACACCACCTTGCTATTCCCTGAGTTCCTCTCTCAGCTCATTGAGTGATGCTGATTTGGACGAAGAACAAGGGAAAGCCCAGCAGATCTGGGTAAAAAACAGGCATCACATGGCTTCAATTCAGACCCGTGATGCAAAGAATAGCCGCAATCAGAATGATGAAGACAGCTCACCCAGCTCAGTCAGCCTCGACTCAGAAGATGACTTGCTGCAAAAGTGCATAACCTCAGCTATGCCTAAGCAGAGGAGGAGGCATTCGGCAAGGAAGAGGAAGGCTGAGAGGAAACAGAAACTGAAGAATAACATACAGAAAGCCATAGAAGGCTGGAACTCTGCAAGAGACCAGGAGAGTGATGATGTGGCATCAGATAAAGACTCAGACCTGAACAGTGTGGAGTGGAGAGCCATTCAGGAGGATGCCAATGCTATTGTCACACGACTGCAGGCTGCATCAAAATCCAGAGAGCTTTCTTCCGAGTCAGAGTCTGTCCTTTCTTTCATGTCTGGTGTGTCTGTTGGATCCAGCTTTCACATCAACCCAGAGAAGGGTGACAGGAGCAAACACATCAAAGAGCAAGGTAAGGGTAATAAAATGGCAGATGGCAGAAATTCCAAAGCCCAGCTAGATTTTGCCCAGCGCAAGCCTGTGCCAAGTTTACCTGTGGTGTTCAGGGGGAGAACAGTGATCTATATGCCAAATCCCAAAAAGGAGGTCAATAGCTCACAGAAGCCTACTCCGAAAAAGATGTCACCCAAGACTGAAGCTCCAGTAAAGAACCCAAACCTGGCCCAACAGAGGTCAAGGAGCCTGCACAGATTAGGACAGCCTAGTGATTCTACTGAGCTTTCCTTACCTAAAAGAAGTTCCACACCACCAGCCAGGATGACCAAAAGTACGTCTTCAGGATCATCCCAAACCTCCACACCATCCCGACAGCCACAAAAGAAACTAACCTCTCCCTTTCCAAACAGTAAACAGattccaaagaaagaaacaaagccaGTGAACAGCCTAATGGACAAGAAATCAAACCCAGCTTCTGCTCAAAAGTCCACCAATGTGAAATCTccagcacacaaaaaaacacagaagtcaCCTGTCCGAATCCCCTTCATGCAGACTCCTTCGAGACAGTCTATGCCTTCCAGGACTATATCCCCTTTGGTCACCAACCAATCATCGCCAAGCATTAgcagacaaaacacacaactatCAGGGAACAGAACCCGTCCTGCCAATCGTCTGGAGCTGGTCCGCATGACTTCTGCGCAGTCAAGTAGTAGTGAGTCAGACCGAAATGGTATCCTGAGGCAGCTGACATTCATCAAAGAATCTCCCAGCATGCTAAGACAGAGAAATGAGGTTCCCTCTTCCAGGTCTGTACCTACCTCCCAGTGTCCATCTCCACGTAAAACACGTTCAGGAGCCCcagctgtgtttctctgttcGTCACGCTGCCAGGAGCTAAAGGGTGCTGGACAAGGACAGAGACAAATGCAGACAAAAGTCCAGGGGCAAGGAACTGTCAGCCAGAATGCAACTCTCTCTAGAGCCAGTTCTAGTGACAGAAGCTTTTCGGGGACCCGTCCAGCCAGGAGAACCAGCTCCGAGAGCCCCGGCCGACTCCCTGAGAAGAACATTGCTGGAGCTTGGCaacgggagagagagaccttcAAGCGCCACTCCTCCTCTCCTCATATCAATGTGTTGAAGAGGGCCACCAGCCCTTCCTCTGTACTATCCTCCTCCTCTGATTCCAGTGGGAAAGCAAAGAGCGAAGACGGCAGTAAGACCCAgcaacaaagacaacaaaaacaaggatCTCGAGCAAATGGACAAATTACTTGGAGGAGGATTCGGGATGAAGACGTACCTCACATCCTAAAGAGCACCCTCCCATCCACTGCGTTACCACTGGTGCAGTCTCCAGAGGGGCAAAAGCCGATGCCTCCACTGCCTGGGAAGCTCCCAACCATCATGCtgccatcaaggaaaacaagTGATGCCACTGTGCAGACAGAGGACTTCACCATAAAAAAGACTAACTCCAGCACTTCTCCCACCATTGAGAAGGCTCCAGACTTCAGTGAGGAAGTAGCCAAGGCAGTTCTCATAAGAAAGATCAGCACAGCTTCCAGCAGCAGTGCGTCCATCCAAGAGGGCGATTTAGCAGAAATATCAGGATCCTTTAAGAGCCACAGTGGCCCAGCTTCTGCCCACTCTGTTGAAGGGCACAATGGGGGAATTGGTCACTTCCGTCATAGCTCTCCCAGCAAGGCTGTAAGGGTCACGCCCTTTAACTACATCCCCAGTCCCATGGCTTGTGGCTCACAGAGTGCGCAAATCCGTACCCCAACACTCAATGAAAAGCCAGGTGAAAAACTTGAAGCTTAA

Function

GO: NA

KEGG:

id description
K02085 APC; adenomatosis polyposis coli protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 1061679 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 1303770 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 1308495 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 1313155 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1913014 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 134258 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 140448 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 435535 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 533991 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 535112 18533183 ~ 18538243 (-) True G156717
AMCG00006192 mRNA downstream 50157 17906040 ~ 17934385 (-) True AMCG00006192
AMCG00006135 mRNA downstream 132571 17835894 ~ 17851971 (-) True AMCG00006135
AMCG00006134 mRNA downstream 158310 17817521 ~ 17826232 (-) True AMCG00006134
AMCG00006156 mRNA downstream 345560 17620883 ~ 17638982 (-) True AMCG00006156
AMCG00006154 mRNA downstream 372164 17597722 ~ 17612378 (-) True AMCG00006154
AMCG00006165 mRNA upstream 15736 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006140 mRNA upstream 443391 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006159 mRNA upstream 639426 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006158 mRNA upstream 751763 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006160 mRNA upstream 776854 18774925 ~ 18780393 (-) True AMCG00006160
TU196984 other downstream 1034425 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 1313155 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 1466431 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 1522383 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2027452 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 1277129 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1450860 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 2711728 20709799 ~ 20712216 (-) True G157059

Expression Profile