RNA id: AMCG00006166


Basic Information

Item Value
RNA id AMCG00006166
length 905
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00006166
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19081039 ~ 19116587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCATGCTGCAGGGGACCAGGAGGAAGAAAAGAGATCTGGGGCCAATGCAGAACGGAGAGTCCATGAGCCCACAGGTACAGGGTCAAGAGGGAGCTGGGGAAGAGCCAAACCAGATGCCCCAGACCTCTGCTCCCCCACTTTCCCCATCTCCGCCACCTCCATCAGGGCCACCTCCCTGCTCGAGGCCCAGGCTTGTTTTCCACACGCAACTGGCCCATGGAAGCCCCACAGGCCGGATCCAAGGATTCACCAACGTCAAAGAATTATATGCAAAGATTGCTGAAGTGTTCAATATCAATCCCTCAGAGATTCTCTTCTGCACTCTGAATTCACACAAAGTGGACATGCAGAAGCTCCTGGGTGGGCAAATTGGACTCGAGGACTTCATCTTTGCTCATGTCAGGGGAGAGACCAAAGAGGTGGAGGTGACAAAAACAGAGGATGCTCTTGGATTGACCATTACTGACAATGGCACAGGATATGCTTTCATCAAGAGGATAAAGGAAGGTAGCATAATTGACCGTCTCAAGACAGTGTGTGTTGGGGATCACATTGAAGCCATCAATGACCAGAGTATAGTGGGCTGCCGGCATTACGAAGTGGCTAAGATGCTGAAGGACCTCCCCAGAGGAACACCTTTCACACTGAGATTAGTGGAGCCCAAAAAAGCATTTGatatGATTGCACAGAGAACAAAATCAGGAAAGTCAAGTGGTGAAGGGAAGATGGGTAGCGGCAGAGAAACCCTACGTTTGAGATCGAAGGGATCTGCCACTGTGCAGGAGGCAccAAATGAGTTTGAAGAGATAGCAACAAAAAAAGTGGATGACCTCCTGGAAAGTTATATGGGAATACGGGACCTTGAGCTGGGTGAGTACCCCTGTTGGGTTTTGTATGTAAAA

Function

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197547 lncRNA downstream 48705 19032130 ~ 19032334 (-) True G156862
TU197530 lncRNA downstream 124724 18956103 ~ 18956315 (-) True G156847
TU197529 lncRNA downstream 125004 18955723 ~ 18956035 (-) True G156846
TU197489 lncRNA downstream 237123 18840801 ~ 18843916 (-) True G156812
TU197464 lncRNA downstream 338830 18741351 ~ 18742209 (-) True G156791
TU197633 lncRNA upstream 273490 19390077 ~ 19390399 (-) True G156929
TU197636 lncRNA upstream 282847 19399434 ~ 19399637 (-) True G156932
TU197640 lncRNA upstream 285595 19402182 ~ 19413340 (-) True G156935
TU197650 lncRNA upstream 332446 19449033 ~ 19451861 (-) False AMCG00006201
TU197651 lncRNA upstream 338802 19455389 ~ 19460205 (-) True AMCG00006201
AMCG00006161 mRNA downstream 193896 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 228960 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006171 mRNA downstream 259633 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006160 mRNA downstream 300646 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006158 mRNA downstream 318391 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006184 mRNA upstream 122778 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006199 mRNA upstream 186073 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006201 mRNA upstream 338049 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006195 mRNA upstream 708238 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 755305 19871892 ~ 19874931 (-) True AMCG00006196
TU196984 other downstream 2130922 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2409652 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2562928 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2618880 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 3123949 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 158613 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 332344 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1593212 20709799 ~ 20712216 (-) True G157059

Expression Profile