RNA id: AMCG00006171


Basic Information

Item Value
RNA id AMCG00006171
length 801
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00006171
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18814417 ~ 18821406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGGGGCGTTTGCCTATGAGAGCTCGGAGGTGGACTGGTGTGAAGACAACTACAGGCACTCAGACTCAGTGGTTGAGTATTACAACACGGTGAGCAGTTtcatcttcttcatcttctccCCGCTCATGCTGTACTTGCTGCACCCTTATGCCAGGGAGAGGAGCTGGGCTGTGCACCTGGTTTGGACCATGATGATCTTTGTAGGCCTCTTCTCCATCTACTTCCACATGACCCTGAGCTACGTAGGTCAAATGCTGGATGAAATCTCCATCCTCTGGGTGCTGGCCATTGGTTATGCTCTCTGGTTTCCACGAAGACACTTTCCCAATTTCATCAAGAACAGGTCTGAGTTCTCCATTCTGGTGTTTCTGACCACTGTGTTCAGTACCCTCTCATCCTTTGCCAAGCCCACTGTCAATGCCTATGCCCTCAACTGCATTGCCCTTCACATCCTGTACTGCCTGGGCCTTGAGTTAAAGGGCTGCACTAACCCTAAAGTCCTGCGGCTGGCTTGGGTCTCCGTTGGCTGGTGGGTACTGGCCATCGGCTGTTGGCTGAGTGACCGCTTCCTTTGCAATTTCTGGAAAAGGATCAACTTCTGTTACCTGCACAGCATctgGCACATCCTCATTGTCGTGGCTACAGCCCATGGCAGTACTGTCATCGCTTACTTTGATGCCACCCACGAGATCCCCTATGCCCTGCCAGAGATCAAGTATTGGCCCAGGGATGATTGGCCCGTGGGTCTTCCATATATTTCCGTGAAAGGCTCATCCAGAACCCAGAAAAAGTGCTGA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197464 lncRNA downstream 72208 18741351 ~ 18742209 (-) True G156791
TU197383 lncRNA downstream 276174 18533183 ~ 18538243 (-) True G156717
TU197382 lncRNA downstream 281970 18532062 ~ 18532447 (-) True G156716
TU197358 lncRNA downstream 380172 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 669642 18138519 ~ 18144775 (-) True G156670
TU197489 lncRNA upstream 19395 18840801 ~ 18843916 (-) True G156812
TU197529 lncRNA upstream 134317 18955723 ~ 18956035 (-) True G156846
TU197530 lncRNA upstream 134697 18956103 ~ 18956315 (-) True G156847
TU197547 lncRNA upstream 210724 19032130 ~ 19032334 (-) True G156862
TU197633 lncRNA upstream 568671 19390077 ~ 19390399 (-) True G156929
AMCG00006160 mRNA downstream 34024 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006158 mRNA downstream 51769 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006159 mRNA downstream 146036 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006140 mRNA downstream 370335 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006165 mRNA downstream 782248 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006172 mRNA upstream 11924 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006161 mRNA upstream 32287 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006166 mRNA upstream 259633 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006184 mRNA upstream 417959 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006199 mRNA upstream 481254 19302660 ~ 19306140 (-) True AMCG00006199
TU196984 other downstream 1864300 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2143030 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2296306 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2352258 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2857327 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 453794 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 627525 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1888393 20709799 ~ 20712216 (-) True G157059

Expression Profile