RNA id: AMCG00006172


Basic Information

Item Value
RNA id AMCG00006172
length 2731
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00006172
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18833330 ~ 18852079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAATTCAACATGGCGGACGCGCAATAATTTGTTGTAAGAAATTGCACCCTTCCGTTCTTTATTGAAATTTCCATTGCACTTTTTCCCACCCTGAAACAGAACCAAATACAGACTGGGAGCGAACCCCTATATGTAAGCCGGCGTATGACAGTCTCTCCTCCAGAAGCTGTTATCCGGCCCTCCTCCTGTCGGATCGACATACCATGATCCCGGGCTCTCCCCTGCCCCCGGCATGTCAGCCACTCCACAGGCTCACCCAGGGCCCGCCTGCGCCACAGAAGGAAAATTGTTTCCTTGTTCTTACCTTGGCTGCAAACAAGTCTTTCCAGACATTCAGAAGTTAATGCATCACACGAGAATCCACAACATCCGAACACAGTCATTACAGGGGAAACTGTTTCGTTGTTCAACCCTGGGCTGCACAGGTACATTTTCCAGCATGGAGCAGCTGATGGAGCACATGGGAAACCACTACAAACCCAACCGCTAttttgtGTGTGAGAGCTGCTCAGCCCGATTACACTCGCACCGTGCTTTTTTCAAGCACCTCCACATCTGTTCCAAGGtggccaaaaacaaaacacctcaGAAGCTGGAGAAAGTCAGAGCTGTCACTGCCACAGAAGTCACTGAATGCACCTCCAAACCAGCTGTTGCTGCCACCAGCAACACTGCTGCCTCCCTCAGCGTCCAGAGCTTCGTCCGAGAAGTGAAGAAGGAACCTGCAGCTGTGCCACTTGCGCCTTTGGCACCCCTTCCACCCCTGTCTGGACACACTGCCCCCTCAGCTGTGCCGGCACTCCCATGCAGCCTTCCCAGTCTCCAGGCCTCTCTCAGCAGCCTCCCCCTCACCACGTTGCCCTCCAACCCTTTCAGCCAGCTGCAGCCCTCTATGCTCGGAGCACCGTCCATGCCCTTCACCTCACAGACCCAGACAGAAGCTTTGCCAACCCCTTTCCTGTCCTACATGCCCCCCACTTCTTTCTCCCTGCCCCAGGCAGTGGTGCAGCAGCAGCGACTCCGAGCCCTCGCCCCTAGTCAGCCTGCTCTGCCAGTTTCCAATGCTGTCTGGAAGAAAAACCAAGGCCAGTCCTTCAACAGTCGCATCATCTGGGAGCACACCAGGGGGCGCTATAACTGCCTGCAGTGTGAGCACTCAACCCCCTCCCGCCAAGAAATGACCATTCACATCGAAGAGCAGCACAAGAGCCCCAGCAACCGCAGCCATGGTGACATGGATTTTGGGGTTGGCCTGGCTTCGCTCCATTCCAAACTGTCGCCAGAGATGGAGAACTCCCTCTTCTCACAGCTCTGATACTTTCTGCCTCGGGAGGGCAGGTGGACCGTGTATATAATGATGAAGGAGCTGGTTCTGGATAACTGCCGCTCAGATGATGGCAAGATACTGGGCCTCACTGCTGATTTCAAGAACCTGGAGTTCCTCAGCATGATCAATGTCAATCTGGTGTCCCTGGACAACCTGCCCAAACTGGGCAAGCTCAGGAAGTTGGAGCTGAGCGACAACAGGATCTCTGGAGGACTGGAGGCCCTGGCAAAGAAGACACCCAACCTGACGCACCTCAACCTGAGTGGGAACAAGATCAAGGATCTCGGCACCCTCGAGCCCCTGAAGAAGATGGCTCAGCTTAGCAGTCTGGACCTTTTCAACTGTGAGGTCACCATGCTCATGGAGTACAGGGACAGCGTGCTTGAGCTGCTGCCCCAGATCACCTACCTGGATGGCTTTGATGCGGATGACCAGGAGGCTCTGGACTCCGACGCCGATGGTGACGGGCTGGACGATGATTTGGACGAAGAAGATGAGGAGGGGGAAGATGACGAAGATGGAGACTTGGATGACGAAGACCTGGATGTGgaggaagatgatgatgatgaagatgatgaagtGGAAGCTGAAGCTGAAGATGATGAGgaggaggaggatgaaaatgaTGATGAGGATGGCGACAGCGATGAGCTggatgatgaagatgaagacgAGGATGAGACCAACCGAGGGGAGAAGAGGAAACGAGAGGCAGATGAAGATGAGGAGGATGGtgaagatgatgatgacgaCGAATGAAGACTGCTCCATTAAAGCCAATGAACTGTACACACTGAATTGTTCTGGACTGCTTTACATCAAAGACATTTGGATAGCGATGGGGATCGTGAATAGTGGGCAGATGCTTTTTGGGTGGGCAGACCCAGTCCACCCAAGCCCATCCTGTGGCCCTAACACAAAGGCTGCTGTATCCCTGAGTTAGTCTATTCTCCCATACACTCCTTCCTGTAATTTCTTCACCAGACCCTGGGGCTCCTCATATTAATGACTGAAGAAATCTTGTGATGGCAACCCCATTGTTTCAGATACTTCTTATCCCAGACTGTTTTAGACGTGCTATTTTGTTCTTCCTGGGTTAACGtcatgttttgtaattaaaaaaaaaaaaaaaaaaaaaaaaaatgcttcgTAAAAATGTCCATGGGGAGTATCGTGCAATACTTAACACCATGCACTGAGCCAACTTCATGTAGGAGAATCAGTGATGTGCACCGGTGAAAATGTTACTGTTCAAGCTGTGATCTGGGGGGGGAAAATAACATGGCACCGATCATTGAGAAAATTACTCCATTTAATGTAAAGGGTGATTTGAACCCTTCTGCGCACAtggaaaatgtacataatacattgtatagATTCAtaaccagttttgtttttatg

Function

GO: NA

KEGG:

id description
K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197464 lncRNA downstream 91121 18741351 ~ 18742209 (-) True G156791
TU197383 lncRNA downstream 295087 18533183 ~ 18538243 (-) True G156717
TU197382 lncRNA downstream 300883 18532062 ~ 18532447 (-) True G156716
TU197358 lncRNA downstream 399085 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 688555 18138519 ~ 18144775 (-) True G156670
TU197529 lncRNA upstream 103644 18955723 ~ 18956035 (-) True G156846
TU197530 lncRNA upstream 104024 18956103 ~ 18956315 (-) True G156847
TU197547 lncRNA upstream 180051 19032130 ~ 19032334 (-) True G156862
TU197633 lncRNA upstream 537998 19390077 ~ 19390399 (-) True G156929
TU197636 lncRNA upstream 547355 19399434 ~ 19399637 (-) True G156932
AMCG00006171 mRNA downstream 11924 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006160 mRNA downstream 52937 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006158 mRNA downstream 70682 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006159 mRNA downstream 164949 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006140 mRNA downstream 389248 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006161 mRNA upstream 1614 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006166 mRNA upstream 228960 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006184 mRNA upstream 387286 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006199 mRNA upstream 450581 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006201 mRNA upstream 602557 19454636 ~ 19463205 (-) False AMCG00006201
TU196984 other downstream 1883213 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2161943 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2315219 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2371171 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2876240 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 423121 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 596852 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1857720 20709799 ~ 20712216 (-) True G157059

Expression Profile