RNA id: AMCG00006178


Basic Information

Item Value
RNA id AMCG00006178
length 4024
RNA type mRNA
GC content 0.42
exon number 17
gene id AMCG00006178
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19473297 ~ 19492763 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATTGATTCGGGCTGCTGTAGTCTTTAAAGCGGAGTCCAGTCACATTGGAGCGCATACTTTGATAGTATTCTTCTTTAATTATCGTCTTTTGTTGGAGGTGTTAACAAagGTGTGAGAATGTGGATCCAGGTTCGTACTATGGATGGGAAGGAGACCCACCGGATTGATTCACTGTCAAAGCTGACAAAAGTTGATGAACTCCGGCTTAAAATCCTGGAAGTTTTTAAAGTTGaaccagagagacagagactatTTTATAGAGGCAAGCAGATGGAAGATGGCCACACCATCTTTGATTACAGCGTGGGTTTAAATGACATTGTTCAGCTGCTGGTGCGACAGGCGATGCCTGTTCGACCCACCGCCGAGCGTAAGGAGAAGGATGCGGAGCTCTCCGACTCAGACTCCGGCTGTGGATCGACCCAGAGCGAGTCGGACAAGAACTCCAATCACGGGGAGAATGCAGCCGAGGGGGAGGTGCAGGCGGGCACATCTACACAGATGGACCTGGTCGATGCTGCGTTCGGCTCTTACAAAATCAATGAGTTTGTTGATGCCCGTGATTTGAACATGGGAGCATGGTTTGAAGCGCAAATTGTCAACGTCACTAAAGAAACTAAAAGCCCCAGTGACTCTGCAGAGAGTATGACTGATCCCGAGATCAGTCAAAGCGAGGAGGAGATTGTGTATCACGTCAAATATGAGGATTATCCAGAGAATGGAGTGGTGAAGCTGTCTGGGAAAGATGTGCGCCCTCGAGCGAGGACTGTGTACCAGTGGCATCAGCTAGACGTGGGCATGGTGGTCATGGTGAACTATAACCCTGATGAACCCAAGGAAAGGGGCTACTGGTATGATGCAGAGATCCAGAAGAAGAGAGAAACCCGCACCGTGCATGAAATATATGCCAAAATACTGCTTGGGGATGCTGGCGATTCTCTCAATGACTGCAAGATCATGTTTGTGACTGAAATATACAAGATTGAAGAGCCAGGAACTGTATCGGAGAGTCCCCTGAAAAGATCCAATGGACCAGAATGTAAGCACTGCAAGGATAACCCGAGCAAGAACTGCCGCATGTGTAACTGTCATGTATGTGGAGTGAAGCAGGATCCTGACAAACAGTTGCTGTGTGATGAATGTGACATGGCCTTCCACATCTACTGCCTCAACCCTCCCCTGAGCAGCATCCCCGAGGATGAGGATTGGTACTGCCCGGACTGTCGTAATGACGTGAGTGAAGTTGTTTTAGCTGGAGAAAAGCTGAAGGAGAGCAAAAAGAAATCCAAAATGGCTTCAGCCAATTCCTCTAGCCAAAGAGACTGGGGAAAGGGTATGGCTTGTGTTGGTCGTACAAAACAATGTACCATTGTGCCCTCCAACCACTATGGGCGAGTCCCTGGTGTTCCTGTGGGCACGATGTGGAAATTTAGGGTGCAGGTTAGTGAGTCAGGTGTTCATAGACCCCATGTAGCTGGAATTCACGGAAGAAGCAATGATGGAGCCTATTCTCTGGTGTTGGCAGGAGGCTATGAAGATGATGTGGATGATGGGAACGAATTCACCTACACAGGATCCGGCGGCAGGGATCTGTCTGGCAACAAGCGAACCGCAGAACAGTCTTGTGATCAGAAACTCACAAACATGAACAGGGCTTTGGCACTGAATTGCAATGCTGTTGTAAATGAAAAGGACGGAGCAGAAGCCAAGGACTGGAAAGCAGGGAAGCCAGTGAGAGTTGTCCGCAGCTCAAAGGGACGAAAACATAGCAAGTACTGCCCAGAGGATGGAAACCGATACGATGGCATCTACAAGGTTGTAAAATACTGGCCAGAAAAGGGGAAGTCTGGTTTTCTGGTGTGGAGGTACTTGTTAAGACGAAATGATGATGAGTCAGCCCCGTGGACCAGAGATGGCAAGGACAGGATTAAGAAGCTTGGACTCACTATGCAGTATCCTGAGGGATATTTAGAAGCTGTTGCTgctaaagagaaagaaaaggagaataaGAACGAAGAGGAGGCAGTGACTGATACTCCTACCAaaggaaagaggaagagaaaatcACAAGGTGGAGATGAAAAGTCCTCGCCAAACAAGCGAACCCCCAAAAAAGTAAAGGTGGAGGCTTATAAACTAACAAAGGAGCAAAAAGGCCTGATTAAGGAGGACGAGCAGAATAAGAAGCTCTGGGATGAGGCCATGCAGTCTCTTAAAGAAGGGCCGAAATTTTTGAATAAAGTTGAAGAGATGTTTCTGTGTATATGTTGCCAAGAAGTTGTGTATCAGCCAGTCACTACAGAGTGCCAACATAATGTCTGCAGGGAATGTTTACAGCGCTCCTTCAAGGCTGACGTGTACACGTGTCCAGCTTGTAGACACGACCTTGGCAAGAACTACAACATGAGCATCAACAAACCCCTCCAAGCCATTCTGACCCAGTTCTTTCCCGGATACAGCAGTGGCCGGTGATGACACCTCCGCTCTTTGCTGCTATGTTTCAATGGAGATGTCATGAACTGTGATAGTGGTATATCAGTATAATCTGCaatgtctttttaatatatggaACAAATGGGTGTATGACAGCTTTCAGTATTGGGCTGTTAGATGTATGACTCTCTCaaattttgttaatgtaaatttTTGCAATTTATGTACAATCTTAATTAGTTCTCTGTATGTAGAAGTTAGTTGGGGGCTTATTagtttaatattaaagtaaCTGCAGGGCTTCTCAATAAATCCGTAAAGCTGTTTGTTGGCGGTGGGGGGTGCTTACCTTTTGTTAAGTCACATTGCTGAACTTTTAAAGCTGCATCATTTGGTTGTCTAAGCATCACCTTTTTATACTGGGTAACAAGGGCAAGATGTTTACTggctaattttaattaataatatgccAACATGTTTAATAAGATCTTtgtgatttagtgttttaaagtgAATAAAACTCTTCGCCATTTACTCAGTTTGCTTATAAATGTTGGATATGCTCAATTTGATTTTCCTCTGTGCGCATTCATTCATCCGGATTTAACTAGTGACTGACTAAGCCATATGTCTGTTGCATCTGGTtttagataataaaaaaaaaaatctgctgctTTCAAGAATTCTGATCTGAAGAAACAAATTTACAATTTTAGAACTAAAATCTCCATTGAGAATGCATTGAGTTCACCTCCagtattttccttaaaaataaatcttgccaAACCATTTCTGCTCCTAACTATATTGTAATGAGCATCAAGTTGATCATGATTCAGCTTGGTCTTATCTGTCACTATTAGCATGTTTATCGGGCGCATGTAATTACACTTTTCTTAAGTATGTGTTCTCACTGCTCCCTCAGAACTGACCTCAAATGTATGAACTTGGAAGTACTTCTGTTTTTGAATAGACCCAGTAAGCCATGCCATGTTTTATACTTTTGAAAGTAGTGATCcactgtataatttatttgttattccATTCATAAAGGTTAGTGACTGTTGATGATCATTGAACCAGATGACCTTAAAATTGAGGTTTTATATTTAACCATAttataattgcaaataaaaccTTCATACAGTCAAACTCGCATACAGTACAGATGTGATACTTTCTagcatttagtttttgtatggTTTATCAAACACGGCAAGGTTTCTTTTCTACAAATTTAACTTCAGATGCCTCTATTAGTCTAAAGGAAACTTAAGGTTGCTATGAATTTGAGCTGATTTCATGGCATTTgccatttaaaagacaaaatattgtGAAAAGGTTTTGAACAAGCTTTCATGCCTGACCCTCCACTGTTCctttttatgttgaaataccaGAATTAGATACCTAGTTTTTTCAAGGGAAATGTAAAACTGATTGGTGTAGGCTTTAAGTGCCTTTGCTTAGTGTGTAACTTTATATAAAACTGCACATTTGAAAGCAGCTTTAAAAGTCATTCAGGTAGTTGTATTACATGACCTTATTGTACTGGATCTTAACTTGTaccgcctttttttttttttct

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197637 lncRNA upstream 71893 19401014 ~ 19401404 (+) True G156933
TU197634 lncRNA upstream 78269 19394816 ~ 19395028 (+) True G156930
TU197632 lncRNA upstream 83077 19389963 ~ 19390220 (+) True G156928
TU197558 lncRNA upstream 231453 19238192 ~ 19241844 (+) True G156868
TU197559 lncRNA upstream 253019 19219804 ~ 19220278 (+) True G156869
TU197743 lncRNA downstream 730571 20223334 ~ 20223613 (+) True G157009
TU197744 lncRNA downstream 735823 20228586 ~ 20229103 (+) True G157010
TU197748 lncRNA downstream 794868 20287631 ~ 20287969 (+) True G157014
TU197768 lncRNA downstream 915755 20408518 ~ 20408775 (+) True G157034
TU197793 lncRNA downstream 1131310 20624073 ~ 20696664 (+) True G157056
AMCG00006200 mRNA upstream 22239 19449208 ~ 19451058 (+) True AMCG00006200
AMCG00006185 mRNA upstream 92510 19349915 ~ 19380787 (+) True AMCG00006185
AMCG00006186 mRNA upstream 127089 19289399 ~ 19346208 (+) True AMCG00006186
AMCG00006183 mRNA upstream 244731 19205774 ~ 19228566 (+) True AMCG00006183
AMCG00006167 mRNA upstream 460966 19010848 ~ 19012331 (+) True AMCG00006167
AMCG00006181 mRNA downstream 30976 19523739 ~ 19539686 (+) True AMCG00006181
AMCG00006182 mRNA downstream 108050 19600813 ~ 19611165 (+) True AMCG00006182
AMCG00006180 mRNA downstream 155843 19648606 ~ 19681766 (+) True AMCG00006180
AMCG00006179 mRNA downstream 208000 19700763 ~ 19702298 (+) True AMCG00006179
AMCG00006198 mRNA downstream 285890 19778653 ~ 19779445 (+) True AMCG00006198
TU197362 other upstream 993210 18478128 ~ 18480087 (+) True AMCG00006174
TU197332 other upstream 1116708 18190224 ~ 18356589 (+) True AMCG00006138
TU197282 other upstream 1492660 17973741 ~ 17980637 (+) False G156640
TU197026 other upstream 2345743 17123205 ~ 17127554 (+) False AMCG00006149
TU196902 other upstream 2844115 16627793 ~ 16629182 (+) True G156327

Expression Profile