RNA id: AMCG00006192


Basic Information

Item Value
RNA id AMCG00006192
length 2954
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00006192
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17906040 ~ 17934385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGAGCAGGCAAGGAAGCCAGTAGAGGCTTTGGTGGACTGTAATGTCTGATAAGACTCACCCACAGCCCCTTGACATCTCCAAAAAGCACCATGAAAGAAACCATGGCAAAGAAAGGGCCTGAAACTCTGAAAACAAACCGACtcattaaatacacattgtttGCCTGTTGCTATCTCTTCTGgGTTGCCAGTGCTATATTGATTTGTGTGGGAATCTATGCAAAAACTGCTAAGGAAGGAGGTGTTGTGGACTCCCTCATAGCTGACCCCGCATTAATGTTGATAATTGTTGGCAGCTTAATGTTCATCATTACTTTTTTTGGATGCTTTGGAGCTCTAAGAGATCTAACCAATCTACTTAAAGTTTTTGCAGGGATCTTGGGGATCATTCTCATTCTGCAGATCACAGCTGCAGTCCTTGGATTTCTATTTTCAGACTTGGTACTGGATAGAACAGAGCAACTAATGGGAAGTGAAATCAAACTATACCGGGATGACATGGACCTGgaaaatattattgattttgttcagAAAAAGTTTCAGTGCTGTGGCGTACAGTCATACAAAGACTGGTCCATGAACATGTACTTCCAGTGTGAGGACACCAACCCCAGTCTGGAGCGCTGTGGGGTCCCCTTCTCCTGCTGCATCAGAAGGAAAAATGAGTCAGTCCTCAATACAATGTGTGGTTATGGGGTTCAAAGTCAGAAAGAATGGTCTGCAAAAGAGAACATTTACACCGGTGGCTGCCTGGATAAGATAGTGAAATGGGGAGAGCAAAATCTTCTCATCATTGGAGGAATAACCATTGGATTGCTCACTCTTGAGATTCTGATGATCATCTTGGCTGCAGTCCATATCTGTCGAATCATGAACGTTCAGCAGACACGAAATAACAACAGTGGGGGGAAATAGCATACAAAGCAATATGCAATATGGAGGGCCTCAGTCATGATACTGTACATGCCAGTAGGACTTTGCAAGTCTCTGTCtattacagtaattattttgttatgagtttttatatattttgccttgaaaaatacattttggctGTTTCATGAATTTGTCAGAATAGTATTGATAGTGAACACTCATTATTCTACAAAGAAATATTCCCAAGCAAATCACAAGAAAAGAttcacacaatatattttactacattattttaaactgtaaatactgtatatagaaaTGCTAATACATTTGATATAGTAATAACTACAACTGTGCTCTGGCTGCATTATCTGTAACTGTGAACATTTCCCCTACAAGTGTGAAACATTTCGTACATTTTGCTGGTCTGCAACACAGTCCTGacaaaatgtacctttattttaagtaaatatgaggtcaaaaagtgttacagttgaacagatgtgtcttttcttttttgccttttcattAGTAAAACTGTATTCCTGCTCATTGTTGGGATATTTAAGTCTTAAATACTCACATATTGACCAAATTAATTACACCtcttttttgtgtataattacactggattctaatatacatttaatgtgtgctttgagagaaatacaaatgcacttacaaatgcatgtaacacatggaaattgttataatgtatacatacaccactaaaacatgcatgttattttattgatgagctgacaaactttgaaatattatatttctgttatacTTTGCCATATGTACACTGAAATCCATAAGATCATGCCCTTGAGGCAATTCAGTGCTCCTGTTTAGGGGGGCGATCGCACATGCAGTGAACTTTGTCTCTGGAGATACACACGTGTTTGTGACACAGCGTTCGTTGATTGTTTTGCAGCCACGGCGCAGTGCCTCTTGGTAAGCTGCGCAGCTGTGCGCACTTTGTAGCCTGTGGCTGCGTCGCCTGGTGACGTCTGTTCTGGCAGCGTACATGCAGACGCAGAACCTGGACAGTTTGTCACAGAGTATGTGAAAAGTCTGCGCAGTCTTACGACACAGAGTAGATAGCTAACCCTACATGCTTGCAATTTAAAGACTTACTCTCAGGAAAAGTTTACCGATAAAAAATCGTTTCATTGTGGTTCcaactgtgttgtttttacttttgttattcAGGTATGTAAATACGGAACAAATAGTGTTCCgtattgattttaaacagaacaaagaaagaTTCCGTATTTTACGGAACAGGTGGCAACCCTAGTATTGATAATCACCTGATTGATATCATTATTTACGaaatcagattttttgttttctcacctTATACAGAGGTGGCAATTGAAGAGCCAGGGATTGACCCAGTTGTTCTCTCACCCTCTTACTTCCCACTAGTCTAGTGTGCCTCTTTTTCACACAGTTGGTTGGCACTGAGCAGGGTGAATAGAGTCCAGATTTCAAAGTGACAAGTTAAATGTTTGGGCAATAGGTGGGCTCAtagattgtattaattattaacaaacATCTGGTTTAACATAAGGTGTTACTTAAGCTGTGATTTTTATGTTCTTTATCATATTGTGTTCATAGGATTTTTTTCATAGGCATTTTGTGTTCGTATGCTTTCTGCAAAACTCTGATGCAGTACTCCCATACTTGTCATAAGATCCTGCATCAGGACATTCAGACTCTCTAAAACCCATTCAGACTCTGTAACCCAACTGTACAAATGATTATATTACAGTGAGAGATGGTCCACTAATTCTAGGaaacaataaatgcatgtttggaAAAGCCCtctaacatgtttttatttttattttttctgtttaacaatatatatttttaagaatccCCAATATGCATTAAACCCTATGTAACTGTGCCTTTCCTGGTTAcgtttttccttcattttaatgGTAACCCAATTTTGTTATACTTTTGGAGAATCTGCTTGACATAATTGTTGGTGATattaaatcatggaatcattcaTTTTTTCCCAGTGGAACTGATATCTTCTAAATATC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 983177 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 1225268 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 1229993 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 1234653 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1834512 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 197944 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 204134 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 499221 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 597677 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 598798 18533183 ~ 18538243 (-) True G156717
AMCG00006135 mRNA downstream 54069 17835894 ~ 17851971 (-) True AMCG00006135
AMCG00006134 mRNA downstream 79808 17817521 ~ 17826232 (-) True AMCG00006134
AMCG00006156 mRNA downstream 267058 17620883 ~ 17638982 (-) True AMCG00006156
AMCG00006154 mRNA downstream 293662 17597722 ~ 17612378 (-) True AMCG00006154
AMCG00006155 mRNA downstream 318445 17567696 ~ 17587595 (-) True AMCG00006155
AMCG00006163 mRNA upstream 50157 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006165 mRNA upstream 79422 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006140 mRNA upstream 507077 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006159 mRNA upstream 703112 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006158 mRNA upstream 815449 18749834 ~ 18762648 (-) True AMCG00006158
TU196984 other downstream 955923 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 1234653 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 1387929 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 1443881 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1948950 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 1340815 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1514546 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 2775414 20709799 ~ 20712216 (-) True G157059

Expression Profile