RNA id: AMCG00006196


Basic Information

Item Value
RNA id AMCG00006196
length 570
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00006196
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19871892 ~ 19874931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTTAAGGACATCAACCAGCGCCAGCGACACAGGCGGAGCATGCGGCATCTTCGACAGCTTGACATTCAGAAGCCCTACATTGCCGCCTGCTTCAAGCCCACATCACTTCCCTCCTACTTCACAGTAGGAAACCAGATGGATTACAATGGCTATGAAAACAGAGCCCTGGAGCCTGGACAGGAATATGTCTTCTTCCTTCTGGCAGAGCTTAATGTGACCACAGTGAAAATGTTTGCCGCCAGCCCATACACGGACACAGTGACCGCTCCAGAAGTGCACCCCCAGCCCATGGACAATGGAGATGGGCTGATTTGGGTGGTGGGACCTGTGTTGGCCGTGGTCTTCATCATCTGTATTGTCATCGCCATCCTGCTCTACAAGAAcAAACGGAAGGAGTCTGAGCCACGCACTAAGTGTCTCCTGAACAATGCCGAAATCACGCCCCACCACCCTACGGATCCCGTAGAGATGAGAAGAATCAACTTCCAGACACCAGGTACCACTTTTGCCCATAACAGGGCAGCACAAATGCTAGGAAATGCAAACGTGGGAGCTTTGGGTCAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197693 lncRNA downstream 66721 19804948 ~ 19805171 (-) True G156979
TU197685 lncRNA downstream 154213 19717173 ~ 19717679 (-) True G156971
TU197659 lncRNA downstream 382051 19485550 ~ 19489841 (-) True G156947
TU197658 lncRNA downstream 391455 19479468 ~ 19480437 (-) True G156946
TU197651 lncRNA downstream 411687 19455389 ~ 19460205 (-) True AMCG00006201
TU197745 lncRNA upstream 353655 20228586 ~ 20229103 (-) True G157011
TU197754 lncRNA upstream 479532 20354463 ~ 20354668 (-) True G157020
TU197764 lncRNA upstream 491658 20366589 ~ 20366830 (-) True G157030
TU197772 lncRNA upstream 544043 20418974 ~ 20419284 (-) True G157038
TU197776 lncRNA upstream 575541 20450472 ~ 20486674 (-) True G157042
AMCG00006195 mRNA downstream 12523 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006201 mRNA downstream 408687 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006199 mRNA downstream 565752 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006184 mRNA downstream 602831 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 755305 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006197 mRNA upstream 5119 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 20494 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006193 mRNA upstream 109748 19984679 ~ 19988411 (-) True AMCG00006193
TU197648 other downstream 420031 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 578072 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2921775 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 3200505 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 3353781 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 834868 20709799 ~ 20712216 (-) True G157059

Expression Profile