RNA id: AMCG00006199


Basic Information

Item Value
RNA id AMCG00006199
length 630
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00006199
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19302660 ~ 19306140 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTGGACAGGGCTATCCAACAGTGCACAGGGTCTCTGTGGGTCCTGCTGGTCATACAGTGCTACAGGGGCTCTGGAGGCCCAATGGAAGAAGAAAACTGGCCAACTGATCTCTCTGAGCAAACAGCAGCTGGTTGACTGCACCACAGACTTTGGAAATATGGCCTGTTCTGGAGGACTGCCTTGCATTTCCTATGAATACATCAAAGACAATGGGGGAATCCAGGCTGAAGCCACCTACCCCTACGTCATGAGAGAGCAGCCCTGCACTAGCAATGCAAGCCAAGTGGTGGCCACAATCAGAGACTGGAAGTACCTCCCGTTGGGTGATGAACAAGCCCTGGAAGATGCTTTGGTCACTATCGGGCCTGTTGCCATCATTATAGATGCCACCAGACCCAGCTTTCAGTTTTATCGCCAAGGGATCTACTATGAGCCAGAGTGCACCGTTTGGAAACAGACACATGCCATGCTTTTGGTTGGATTTGGAGTCAAAGGGCCTGACCAGTACTGGACAATCAAGaacagCTGGGGCCCTTACTGGGGGGATCATGGGTATCTCCACCTGGCCAAGAACAGGAACACTCACTGTGGAATTGGACAGTATGGAGTTGTTCCCTTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197547 lncRNA downstream 270326 19032130 ~ 19032334 (-) True G156862
TU197530 lncRNA downstream 346345 18956103 ~ 18956315 (-) True G156847
TU197529 lncRNA downstream 346625 18955723 ~ 18956035 (-) True G156846
TU197489 lncRNA downstream 458744 18840801 ~ 18843916 (-) True G156812
TU197464 lncRNA downstream 560451 18741351 ~ 18742209 (-) True G156791
TU197633 lncRNA upstream 83937 19390077 ~ 19390399 (-) True G156929
TU197636 lncRNA upstream 93294 19399434 ~ 19399637 (-) True G156932
TU197640 lncRNA upstream 96042 19402182 ~ 19413340 (-) True G156935
TU197650 lncRNA upstream 142893 19449033 ~ 19451861 (-) False AMCG00006201
TU197651 lncRNA upstream 149249 19455389 ~ 19460205 (-) True AMCG00006201
AMCG00006184 mRNA downstream 33599 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 186073 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 415517 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 450581 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006171 mRNA downstream 481254 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006201 mRNA upstream 148496 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006195 mRNA upstream 518685 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 565752 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 573910 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 589285 19895425 ~ 19922471 (-) True AMCG00006194
TU197609 other downstream 8840 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2352543 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2631273 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2784549 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2840501 16454369 ~ 16462159 (-) False AMCG00006083
TU197648 other upstream 142791 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1403659 20709799 ~ 20712216 (-) True G157059

Expression Profile