RNA id: TU197648


Basic Information

Item Value
RNA id TU197648
length 2931
RNA type TUCP
GC content 0.51
exon number 1
gene id AMCG00006201
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19448931 ~ 19463205 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGCAGGATAACTGAATTTTATTCAGGCatcttaactttttttcttttttcgtGTAGGTGTTGTTCAATTAAACACGGGAACTCCAGTTACTGTGCAAGTCCATGATTTGATGCAAAATAATAGAACTAgaatttcaaagtgcttttaaataaggtcaaatgaataacaacaacaacaacaacaacaaaatatagatcatgagattaaaaattaaaataagactaAGGTGTGAAAACGTGCTTGTCCCGCTCCCAGTTCTCGGGTTCAGAATCTAACTCCTGTTCCTGGAACCACTGATAAGCTGTAAATGGATTTGCAACACAGCTGCTAAAATCAGCTCTGGACAGTACAAACAGGATTTTAACAAGCAGCCTCAAGTATGCAGATCGCTGTACCTACTGAGACACATTCAGGTAAGCACTGGGTGACATCTGTTAATTGCAGCATTAGCATGGTCTGGATGACATTGCTTCTAATTGTTTTAGTAAAAttagacataaaataaaataaggaactAGGTACTGGACAGACAAATCGGTACCCACGAGGCCGTGGAGAAAACCACCCCGCCTGACCCCCAAGCCCGAAACATGCAAGCTTTTGGCAATTTTGACCCCCTTGCCTCCTCCTATTCTTCTGCCCCAGCTTCATAAGTAAGCTTGTAGCGCAGACTGATATAACAAGACAACAGttaaatagttgtttcttgGTAGTCTcaagtaaaagaaaatgcactgaGACatggagaaacacagagagagagagagagagagagagagagagagagagagagagagggcttaGTGCAGCTCAATGAAGGGCTCCATCTCTTCAGGGATGAGCCCCTTGTAAGGGACTGCGTGTTTTTCCACAGCTCGGGCGGCAAGGCACTGCAGGGTGACATGATTGAGAGGGTGCACGGTGTTCTTGGCTTTGGCCTTCTCGTCCAGCAGCTCGTAGGCTGTCTTGCGCTGGGAGTTGGTGGCATCAAAGTGGGCGCCTGCCTCGATGAGCATGCTCATGATCTCGGGGCTGCCATTGATGGCCGACACGTGCAGGGGGGTGTTGTTGTCAAAGTCGCGTGAGTCCACGTCTGCCCCGCACTCGAAGAGCAGAAGGGCCACTTGCAGTGAGGGGAACTTGCCCACAGGGTAGCGCCCCACGGTGGTGGTGTCCTTGTCCACGGCCATGTGCAGCGGGGTGTATCCATTGCGAGCCCGGGGGTTGAGTTTGAGCAGCCGGTAGATCGTCTGCTTCTTCTGGTGCTCCTGCTCGGCACTGCAGTCCACTTTCTCCAGCAGGTAGATCAAGTGTAGGATAATGGAGAGGGCCTTGGTGAACTGGGGTACCTCTGGTGGGTTGTCTTGCTGGGCGATGGCTCTTTCCACCTCCCGCACGCTCTTGCACAGGATGCCCATGAGGTCAGCGAAGGTGACACGGGTGGCCAGGGTGCCCTTGGCACGGTCCTTCAGCACAAAGGAAAAGAGCTCAGCGAAGGACAGGAAGCTGCTGGCCGTCATGGGGCTAAGCGGGTCCAGGTTGCTCTGCTGCATGTCTAGTGCGTACTTCCACAGGTTGATGCAGCGCTCGAAGTTGCCCGAGTCAGCATACACTGCCCCCCGGTAGCGGATGTAGTAAGAAGTGTCGGGGTGTGAGGGCCCCAGGATGCGCTCGCGGATCAGCAGTGCCTGCATGCGCATCTCGTCGGGGTCGGTGATCAGGGCCTCCAGCTCCTCACTGGTAGTCACCTCATGGGAGTAGTCGTATGCCAAAACTGGCGGCCCAGGCTGTGGCTTGGAGATGACACAGCCCTTGTCTCCATGCCTCATCTCCATTGCCCTTTTCCAATACTTCATGGCCCCCAGCAAGTCCCTCTTTTTGTCCACAAAGGTGGCCCCTAGCAGCTCCAGAGCGTCGATGCGCTCTTCTTTGGAGGAGCGTGGCTGGTGGATGAGGTACTCCACGATGTTGGTGTGCCCTGTCACACTAGCTGCCAACAGGGGTGTCATGCCATAGCCGTCCTTCTCCATACGGGCATTACACTTCAGCAGCATTTTCATAATGTCCAGACTGCCCGACTCGGCGCAGTCGTGCAGGGCCGTGTTGCCCTTCACGCTCTTGCGGTTCACGTCggcccctttctccagcaggTATTTGGCGATCTCCTTGTGCCCTTTGTAGCAGGAGATCATAAGGCAGGTGTGCCCATGGCGGTTGGCCACTTCCATGTCGGCCTTGTGCTCAATCAGGTAGCGCACTATTTCCAAGTGGCCGTCAAAGCAGGCGGCCCGCAGAGGAGTGGAGTTTGTCAAGGTAGTGTTGTTCACGGACGCCCCATGTTTCAGCAAACTCCTCACCACCTGCAAGTGCCCTGCTGCAGAAGCTGCCCACAAAGGGGGGGCTCCTTCAATAGTCTCCCCGTCAAAATTAACAGAGCCCCCCAGCTCCACATTTGCCTTGCAGTGCTCCAGTAAATAGTCCACGACCTCCAGATGTCCATATCTGGAGGCAATTAGTAAAGGAGTGCCCCCTTGGGTCTTTTCCTCCGCCAGCGCTTCCAACTCCTCGGGACTTTTGTTGCTCAGCAACTTCTGAATAAGTTTCAGCTTCCCATCTCTGGCAGCGTTGAAAACCGCAGTTTTAATATCCATTTTACCGGCGCTGAGACTTTCCTTCGGCCATTTAACCCCGTGTCGCGTCCATAAAGCGTGaaacaaaatcagttttcaaaattaaaaacaaatcctatctgtgtctctgcctcttgcttgcattttcagacattttaaagcTGCTGACAAAATGGAGACTATGCAGTTTGACAGTTCTCTGTTTACCATTTCCGCTGAGCATAACGAGAGTTGTAGTCTTACCGCAGCCAGTGCTCCGTGTCTTCCCTCACAGCTGTCGCTTTGTTTGAAATACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197640 lncRNA downstream 35591 19402182 ~ 19413340 (-) True G156935
TU197636 lncRNA downstream 49294 19399434 ~ 19399637 (-) True G156932
TU197633 lncRNA downstream 58532 19390077 ~ 19390399 (-) True G156929
TU197547 lncRNA downstream 416597 19032130 ~ 19032334 (-) True G156862
TU197530 lncRNA downstream 492616 18956103 ~ 18956315 (-) True G156847
TU197651 lncRNA upstream 3528 19455389 ~ 19460205 (-) True AMCG00006201
TU197658 lncRNA upstream 27607 19479468 ~ 19480437 (-) True G156946
TU197659 lncRNA upstream 33689 19485550 ~ 19489841 (-) True G156947
TU197685 lncRNA upstream 265312 19717173 ~ 19717679 (-) True G156971
TU197693 lncRNA upstream 353087 19804948 ~ 19805171 (-) True G156979
AMCG00006199 mRNA downstream 142791 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006184 mRNA downstream 179870 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 332344 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 561788 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 596852 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006201 mRNA upstream 2775 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006195 mRNA upstream 372964 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 420031 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 428189 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 443564 19895425 ~ 19922471 (-) True AMCG00006194
TU197609 other downstream 155111 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2498814 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2777544 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2930820 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2986772 16454369 ~ 16462159 (-) False AMCG00006083
TU197805 other upstream 1257938 20709799 ~ 20712216 (-) True G157059

Expression Profile