RNA id: TU197651


Basic Information

Item Value
RNA id TU197651
length 3799
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00006201
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19448931 ~ 19463205 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAGGCTCCAGTTTTAATCCTGGCACTTgagttgtttttattgaattattcttttttaaattgttattatattaacCCAATCAAATACATGCACCTGAATGTGCTTGGATGGATTGGACAAGTCAAATGGATTTATGTTGCTATTGCAAACCATTTGTAAGTCTATAAAACTTTAACCTCATACCTAATCCATAATGACTTTGAATCCATTCAACCAGTTCAGCAAATATCTTGGAGGCTTTTAGCCTTTGAGTTCTCAATACAATTTCAAGTGACACCCCCTCTAGGTTGCCCTCCTATCAGATGTGTTGGTCATTGATCAGGAAAATAAGTCCCTTAAGACTGAATAAGAGTCTGAAGAGAACTCTGGACCTTGAGGGCTAATGGGTAATCAGGTAAGGCTGTATTAGGGTCTGTAGGATCAGGGGTGGGGAACCGTGCTTTGGGCAAATGGCTGCACTGTGTAATGAGTCAATTCTGATGAAGGCATGGATTGGTGTATCAATGCACttttttaacattacattacattatttgtcatttagcagacactcttatccagggcgacttacatttgtacccatttatacagctgggcattttactggagcaatctaagtgaagtacattgctcaagggtacaacagcactgccccacccaggatttgaacccacaaccttcagTTATGAGTTCAGAGCCTGTCAAAACtgtcaaaacaatacattctgCTTTAGTTGTTACATAAACTTCATTAATTTAATCCCTTGTAGCCCATAACCATGtgtttaataaaacctttaatttgcaggtgaattaatttaaataataataacccaacTCTGCAACTGGTATTAAGACCTTATTTAGTAAATATTCTGACCCATGTTGATGTGGGTGTGTAAATGTCAGGATTATGCTCTGGTAATGTGTTCAAGTGTTTTGATGGCAGGAAACTAAAaccacattattattaccaaTGGTGAGCAAATGAATAATgcataaaatactatttatctTTGAATTGTTCCTATGGCACTGTTCAGCAAATGGCCTGTTTCATTTCAAGGCAGAttgaattaaattgatattGAGGGCCTCACAATGTGTAGCGTTCTTAGTGGTGCCTCTCCATGTGTGACTCACTACACTCCGGTAaggctgtgttttgtattactGGATTCTCCAGTTAACACCCATGTCTAAACCATTGCCTATGgccagttttcattttttttttttttttttttttttttttttttaacatgaacaaaccagtgcctgtgatttgtattattatgtgtaaGATCGGTGTGGCATAATACTGCAGGTGATTCTGGTTTGATTAGGTATTTACCCCCTGTCTGTATTTGGGCCACTACTCGGTTTCCAGAATAAAACATGCAGCAGACATTCTAGTGCAGCAGGCAGTCTTGTAGTCGTTATTGGAAAAGGGGGATTATTATGCAGCCCAGGGTGGTTAATTCCAAAGCGGGCTCTCATACCATTGGGGTCAATAGGCAGGTTTGCCATTCTCCTCTGTTTCACTCTCCTACACCCTGCTCGCTTTCCCCCTCAGGTACTATGCGGGGACTTAGCTGGGTTGTTTCCCTTATACAGAGTGAGCTTCATGAATTCCAGATGTGTCCGCCGGTCACCTGGCCTGACAGGTGATGGACAGGTATTTTGTCCCAGGTTGGCGAAGTCAGACAAAGGGAGAAGAAAGAGGCACTTCTTCAGGAGGTAGCACTCCTGGTGTAGGACAGATCTACTTGGTCTAGCCACTCCAATAAAAGTGATATCAACTGAAATTGACCCTAATATTAAGGGCCATTCTACAGTTAAATGTAGTGCTTGAATGCAGGAGACCAATATGTGACATAAACAAAACTTTTGGTTAATGAAGCTGTGGCAAATTTGTTAATTTAGAGATCTTTCAGAAACAAGCGCCCTCAAGACCAACCTCTGTAAAACTTCAATCAAAGCACCCATAACTTGAGGCTGTCCAGAAACAGGGTTGAAGATGTTAATGCATCTAGACCAGCAGGGGGCACCAGACATTTCAAACCAGCATGGAATGACATATTAAACTGACTATTTATGGTCCTCAGTTGAATGTCTCTTAAAGGTCTCATGGCATTATTAAACAGTACAGGTACTGAACACCATCTTAAATTGCAGGGCAGAATGtcataatgtaaattaaattaatttcctcCCTCTGCATATTATTAACTGTATGTGTCTGTAGGCTGCCAAAGAAACAATGTAGAAACGAAGCATGCACATTTTCTTGGCAACAATAGACTAAATCAGTGTACGGGTATGTGTAAATTACTTaatagaaaacagaaagaaaaaagatcagCATATTGGATGATTACGAATGGCTTAAACACCTTGCTGTAAGCAAATAGAAGCACCTTGATCTATTACTGAAATAAACCTGTGCATATCTAAATAGTCTGACTAACCACAAATAATATGCATAGCTGATCTGAAAAACTCACACAGctgttacaaataaataaaccaaaatataaacacacacatacaaatggaaaataccCAACTTTCCAGatttgtcttaaaaaataaCCTTTATATCACAGAAAGAAACCTATTATGTGCATTGCAGCATTAATATTACCTTCTGAAATAAAGATAGCTCTACAGCTCTTGAGactacattaattttaaattagatcATATCATAATTACATCAGATCATATAAATTAGACCTTTGATAAAAATCTCTCCTactgatgtatatatttagtctttttaaaagcatttttgcactttcataagtcatatattgtatatttaagtTCAGAATACTCATAATACCAGTATagcatgcatacacacaaatataattaactttttaataattgtaaaagtCAGTGTAACTACATCTCCATCTGAACAATGCTCCTCTAATCTCAATGAGGTTTTCTCCAATGCATGTTTTCTCCTTTACAGTAAGGACTGTAATTTACAAATAGCACATCTTCCTTATCACAGATTGGTCCCTAAGGTTACTGCCATTGTTGCTTTCACCAATTTAAGTCCAATTGAGAAATTATCTGAGGACACAGGGACTTTCAATACTTCTGAAACTTTATTCATTGCTCAAATAGATCTGCTCTGCACTGCACATGGACTGGAACGGgagaacacaaatgaaaaagtaaaagcGTTCATataatcaaagtaatcaaagtgaaaaacttGCACTAAATAGTAGGCTGAGACCACTACAGAGATCATTCTAACAGGGAAGAGGGAAACCTACTGTACTTCTTCATTGCCATAATACATTTAGTATTTGCAGTATTGTTTTATAGTTGAGTGAAGCAGTCAATGTCCCTTGTACACCAATTAACCTTGAAAATGGCTTGATGTGACATGACagtgaagtcaaaacagcagagtccttggcCTCCTTCAaggcttactcaaaacacatcttttcagacaatacttAGTAATATTAGTACTTTAcgttttatcatgcttcttgcgttactagaACTCGTATTATTGATttcccctttgctccctttcctgtagcccttgactgccACCTAACATCTTGACCGCACTTAGCTtatactttccaggatgtaagactacatttattgtattcacttgtgtaacttgcaatttgtataatgtattatgtaaatctgaatttgtaatgtttgaggtcttgtactgaactgtatttttgcactttgtattgcgcttatattttgtaagtcgccctggctaagggtgtctgccaatcaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197650 lncRNA downstream 3528 19449033 ~ 19451861 (-) False AMCG00006201
TU197640 lncRNA downstream 42049 19402182 ~ 19413340 (-) True G156935
TU197636 lncRNA downstream 55752 19399434 ~ 19399637 (-) True G156932
TU197633 lncRNA downstream 64990 19390077 ~ 19390399 (-) True G156929
TU197547 lncRNA downstream 423055 19032130 ~ 19032334 (-) True G156862
TU197658 lncRNA upstream 19263 19479468 ~ 19480437 (-) True G156946
TU197659 lncRNA upstream 25345 19485550 ~ 19489841 (-) True G156947
TU197685 lncRNA upstream 256968 19717173 ~ 19717679 (-) True G156971
TU197693 lncRNA upstream 344743 19804948 ~ 19805171 (-) True G156979
TU197745 lncRNA upstream 768381 20228586 ~ 20229103 (-) True G157011
AMCG00006199 mRNA downstream 149249 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006184 mRNA downstream 186328 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 338802 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 568246 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 603310 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006195 mRNA upstream 364620 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 411687 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 419845 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 435220 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006193 mRNA upstream 524474 19984679 ~ 19988411 (-) True AMCG00006193
TU197648 other downstream 3528 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 161569 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2505272 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2784002 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2937278 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 1249594 20709799 ~ 20712216 (-) True G157059

Expression Profile