RNA id: TU191322


Basic Information

Item Value
RNA id TU191322
length 3913
lncRNA type read_through
GC content 0.50
exon number 3
gene id G151957
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 242154 ~ 332344 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatNNNNNNNNNNNNCCAAGAGGACGGCACCCAGTCGTTGCCCATGGGGCGTGTGTCTGTGGCTGTCGGGCCAGAAGGGGCGTCTGTTGTTACCCGGTTCcttattttattccattcacACAGATCTCGTGTTGCTTCGAAGCGCTGCCGGCACACGCCAGTGGCTCCTGTAGCGCTGGACTCGGATGAGATCTGCTGTCTGTACCTGAAGGATAAACATGTTCAGTTCTGCTTGTTAAGGGTTTGATCTGTTTTATTCGTCTGCACTTTTTCCCCTGCTTTTTATGTCAAAAAAGATCCTCAATTGAATGTAACTCGATGGCCGAGTCTGACGGATGCTCGGTGGCTGGAGAACGTCTGCCCGTTGTGTCCATTAGAGTCACAAGTGTGTTTGTCATTGAAAGTATGGTGTACGTTTATTTTAGTGACTTACAGCTGATGAAATACTCGTTAATGAGGCCCTGCGTCACGATGACGGTCCTGTGACGTATGAGAGCTCTGCACCTGTGTTGCGAAGGAGATGGGCTTCCACTCTTAGATGGGGCACTACGTCCTCAAACCTCAATCCAGACGCTTGTAGCTTCGTCTTTTCTTCATTGCCGTCGATGTTCTTCCCTCTCTGATCCGGGGAAATCGTATCTGCAGGTTTGATTCTGGCTGTCCTGCAAGGCCTTGTGATCTGTTGTGCGAAGGCAGGTGTAAAAAGTCACGTTCGGACCTTAAAGAGCTCTGCACTGCAGACGCAATAAACACAGCCTGTACAAACCACACATGTGACGCTGCAGCCCTGTCCGGCGGCGCGAGGATCCGGTCGTGGGCCGTCTCGTGTCTCCGCTGCGGCTCTCGCTTCTGAGACAATAGCGTGTCGTCTTTTAGCAAAACCGTTTACCTGTTTATTCATTCAAGATCTTTTGTTTTCCAAGGTGATTGCCTTAACAAGGCCTAATATTGAAATTTCCAGCCTTGAGTTGAAGTCACGAGCGAAGAAATGGAGGGGTgtgaaagattattatcGCAGTCCTCCCTGGATCGCCTGCCGGTTCCCCTTGAGAATCCCACGCCTGCACCGCACACCCAGATTCACCTCACGGGTCATATCTGAGCTGTGTCAAGTCCgtctttgtgtgtctggttTAAAGCGATGGAGCAGGGTCTCGTTCTGTAGCGCGGGGGGGGAGTTGGAGACGCAGCTCGCTGTAGCGAACCGTACATACGGGTCAATCTGAGCGACCTGTACGAGGGGCTGGGGAGTGTAGGGCCCTGCACAGCCCTGCCCTCGTGTAGAACCAGTCTTGCATCGcggtgggggggcagtgtctTTTCCGAGCCCCGTCTGCAGATCTGATTTAACCAGGTGGTGCAGAACAATGTGAAATGGAAGTTGTAGCAGCTTGCTTTTAAACAGACCGGAGATGATGTAACATTTAACCTTGATATTGTTGCAGTAGAGAAATAAGTTTCCTTTgggtttaaatgtgtatgtgttgtggCAACGGATGCCTCGCTGTCCATGTAACTCCCCCGCAAACTAAGAGTGCCAAAAACAGCGCGCCGGAGCTGGCGCCCCTCACCTGCGCCTTGATGCCTTTGTCCATCAAACTGCCCTGGCTTGTAAATAGCGCTTGCGTTGGAAAGCATCGACAACGGTCCGAGCCCTGACGACCGAAAGATTTCCTCAATAAAACATCTGTTAGCAACCCGAAGAGCGTCTGCTTTGTTCACCGGCCGCCTGTGTGTGACTGTAAACGCCAAGACAgagaatatattaaattaaagtggGAAAACAACTGAGGTTTGGAGATGTGATGTGCGCTGGCCTGTGACTGCAGGGGCTGAGAGACTTCACCTCTGTGTGCATGTCTCTCTGTCCGTCGACTCTGAGACACTGAGCTCAAACGCACTGACGTTGCTTCGCTGCCACTGCTTGAGCCCGCAGTCGCGCCTCGGGGGGGTCTGCTGGTGGTTGCATGCTGCGAGTTGTGCAGGAATCACTGCAAGCTATCACTCGGTTCAacagaaaatcaataaaatgcattatctggccagtcttttaaaatgaatacatggttttgtttttgcacttaAACCTTTTTTGTCTCCTCTGCTTTTGGAGGCACTTAATAGACACCCCTGTCAACAGCAAACTAACGTGATGTTTGTGTCGGCCCGGGTTTGTCTTTTGGGCAACCAATGCGATATTGAGCAGACTTTCTGCCGCTACGTTTGCTCCTTTGCATTCTCTTTTAGGACTACTGTAGGAAACAGATCTCTTAAATTCAGTGTTGATTGTCCCACGAGTCCACAGCTGCACCCCTGAGAGCATTTTCTATAGAAATGCCAGcgtgcagtttttaaaagtaaaacaattacacacacagtgTTGGTAATTAACTGATAAACACAGACGTGGATTCTAGTTCTTCAATCCCTATTGCTCAGCTTTGTGTGGAGatttaggtgtgtgtgttgggtgttTTGCAGTCTGCACACTCCAGTGTCTTCAACATGAAGATGCATCTTAAACACACAGCCCAAGAGCAGGGCGAGGGAGTGCCAGCCTTCATGCCAGTCCCCAGAAACAGCCCTGTTCCCCCGTTACACGTGTTCAGTAGCGGTTTGCAGTCACACAGACCACACCGCACACCATCTGTCTGCTTCCTGTAGCGCCGTGTTGATGGTGTCGACGGGCGCGTGGGTGAAGACGCCAGCTGTGGTTAAacgaggggaggggaggggggttcgGTTCGGTCCTGGCTGTTGACTCGCCTGTCTTGCTGCATGATTGTAAATGTGAATAACAGCTGATCTGTTTCCAGTGATGACAATCTCTCACAGATTGAGTTTCTGTgctgtttgtaaaatgtgcgtctgcttttctgaataaaagaaggaaagagaaaCGCGCAGTGGTTCAGATTTCAGAGTGCAGCGCGTTGGCACGGGGCCTGCGCGGCTCGACTTGCCGATCTGATCTCACGGAGACGCAGTTTGATTATTGTTGATTGCTGGCAAACAGTTGGGACTGCTTGAGCGAACAGCCGCTCATCCCGTGGGGCTCGTCTGCTGGCCGTGTTTCCAGACACGCTTTAGACGTCGGCCTTAGAAATGGGCTTAATCACCaataaactgcaaattaaacaactgaaaatgtttccCAATGAAAAGCTGTATTGGTTGTTTTAACACAGCTCACAAACATCCACAGGAGTTGAGGGGGTGCATGTCTTACACTAATTAACCAGAAAGGGCAGAGGCGAGGGAGGGGGCACACAGTTTAATAATTGCTacagtaatttaataattgCAGATTGCTGCACAACAGATTGTGTTGTATGGGGAGACAGATCCCATCATTCACTTTTGCACAGGTCTTGCTCATGTCCTCTGGTCTCCACCGGTGTCTCGGACGCCTCCCAGGCCCTCGCAGCGTCCACAGGGCCCGGCATCACGGGCAGCACAGACCCGCGTGTGCATGGCATCGGCTTCCCTCCCCTGGCGTGACGCAGCGGAACAGAGCAGGCGCCCAGTCGAGCGCTGAGACGGCGCTGCGAGTCTGGTGTCGCCCTTTATGGGCATCAGTCACGGCACCTTGGTATCGCCCGTCTGTCAGAGAGACGCCCCGAGGACAGTCCCTGTTCACCTGCACTGGCCTGCGTTAATTTGTCAACTAACCACACGCAATCGCAGTGACGTGCGACACTTTAGTGCAGCTACACACAACAACAGACTGCATGATCACACGTGAGCAGGTATCCCGACCCAGGTGGAGTGACTTCAATTTCACACCTTCGGGGAACTCCTGGGTTTCATATtgaaattataattgtgttgcttCTGTGCGTCCATGTCTTTCATCCAAAaggcatttgcatttaaataaactattgcAGACCAGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191313 lncRNA downstream 129742 108398 ~ 112412 (-) True AMCG00005400
TU191281 lncRNA downstream 142484 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA downstream 142484 95121 ~ 99670 (-) False AMCG00005399
TU191242 lncRNA downstream 205759 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 209343 31994 ~ 32811 (-) True G151901
TU191337 lncRNA upstream 14653 346997 ~ 350322 (-) True G151970
TU191340 lncRNA upstream 45011 377355 ~ 377713 (-) True G151972
TU191347 lncRNA upstream 358315 690659 ~ 690942 (-) True G151979
TU191479 lncRNA upstream 666010 998354 ~ 1009739 (-) True G152071
TU191494 lncRNA upstream 733115 1065459 ~ 1070656 (-) True G152085
AMCG00005396 mRNA downstream 9779 227258 ~ 232375 (-) True AMCG00005396
AMCG00005401 mRNA downstream 91040 148035 ~ 151114 (-) True AMCG00005401
AMCG00005400 mRNA downstream 121607 111253 ~ 120547 (-) False AMCG00005400
AMCG00005398 mRNA downstream 135656 104130 ~ 106498 (-) True AMCG00005398
AMCG00005399 mRNA downstream 142606 94352 ~ 99548 (-) True AMCG00005399
AMCG00005391 mRNA upstream 18421 350765 ~ 375012 (-) True AMCG00005391
AMCG00005387 mRNA upstream 66576 398920 ~ 400797 (-) True AMCG00005387
AMCG00005388 mRNA upstream 538813 871157 ~ 873005 (-) True AMCG00005388
AMCG00005454 mRNA upstream 639327 971671 ~ 973719 (-) True AMCG00005454
AMCG00005474 mRNA upstream 682308 1014652 ~ 1021117 (-) True AMCG00005474
TU191268 other downstream 178426 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 886983 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1039039 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1173596 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1280429 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1376339 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile