RNA id: TU191334



Basic Information


Item Value
RNA id TU191334
length 941
RNA type TUCP
GC content 0.64
exon number 1
gene id G151967
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 398925 ~ 399865 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCAGGGTGAACTGCTCCACGGTGGAGTTGGGCACCAGGAACAGCTTGATGCTGAGGATTTCCCCGGGCTTCAGTGGCTTCTCTGGCAGGCGCAGGAACATGTTCTTGTCCAGCTGCTTGTCCACCATCATCTGCTCCTGGCTGGGCTGGTACAGGCTGATGCTGCCGATGCGTAGGAGAGGGTGCTGGGTGGGCACCTCGCCCCGGGCTGCCCCTCTGCGGGGGGAATTGTCTCCGCACTCGCCGCTGCCGTCGGCCTCGTGCACCGTGTAGTACAGCTCCGCCTGCAGGGTCTCGCCGCTCATCTCCATGCCCTCCACGCCCTTGCGCCGGCCCAGGGGTGCCACATTGGTGTTGAACCATGTCGCCGGGAGCTCCAGCTGAGCCAGGCAGCGCGCCAGGTCCCCCCGCAGCCGGCAGGACGTCTTGATCTCCCGGACGTCCCGGAAGGCGTGGAGGCGGATGCAGGGCAGCTTGTCCAACACCTTGAAGTCGTCCCAGTCTCGGCCGGCGATATAGAAGAGGACCTGCACCACGGGGTTGCTGGAGAAGACACGCGGCTGGACGATGAAGGCCCGCACCTTCCAGTTGACCGTCAGCCAGCCGGGGATGTCCAGGGGGCTGGAGGGCTGCAGCAAGTCTTTGGAGAGCCTCTGGCCCTGGGAGAAAGGACCAAAGGTGACGTTGACCACCGGGAGCTCCTTGGTCTGGAACACCACGAAGCTCTCGGAGCGCTGGAGGAGGTTGCCGCTCTGGTTGCCCGGTGGCTCCGCCCGCGTCTCCCGCAGGAAGAAGGCGAGCTGTGCACTGGAGAGCTTAAAGTTGGCCGGCAGGTAGACATTAGGGGGCGTGGAGGTGGTGGTGGCGACCGAGGCACCAAGGAGAGCGTCGGAATTGGTGGGCAACACTTTGCTCgcaactgagagagagagagagagagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191331 lncRNA upstream 38633 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 43065 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 150806 175252 ~ 248119 (+) True G151941
TU191290 lncRNA upstream 287516 108376 ~ 111409 (+) True G151938
TU191235 lncRNA upstream 362532 35764 ~ 36393 (+) True G151896
TU191335 lncRNA downstream 136030 535895 ~ 536692 (+) True G151968
TU191346 lncRNA downstream 290794 690659 ~ 690936 (+) True G151978
TU191435 lncRNA downstream 614213 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 657320 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 845166 1245031 ~ 1253959 (+) True G152111
AMCG00005393 mRNA upstream 140123 257084 ~ 258802 (+) True AMCG00005393
AMCG00005392 mRNA upstream 141879 255058 ~ 257046 (+) True AMCG00005392
AMCG00005402 mRNA upstream 307398 90255 ~ 91527 (+) True AMCG00005402
AMCG00005403 mRNA upstream 317656 76221 ~ 81269 (+) True AMCG00005403
AMCG00005404 mRNA upstream 323356 68283 ~ 75569 (+) True AMCG00005404
AMCG00005448 mRNA downstream 479102 878967 ~ 904620 (+) True AMCG00005448
AMCG00005451 mRNA downstream 506963 906828 ~ 925853 (+) True AMCG00005451
AMCG00005452 mRNA downstream 526333 926198 ~ 933420 (+) True AMCG00005452
AMCG00005449 mRNA downstream 535869 935734 ~ 947232 (+) True AMCG00005449
AMCG00005453 mRNA downstream 553365 953230 ~ 956421 (+) True AMCG00005453
TU191336 other downstream 136886 536751 ~ 537363 (+) True G151969
TU191585 other downstream 967149 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 976603 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 1346095 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 1399946 1799811 ~ 1803903 (+) True G152337

Expression Profile