RNA id: TU191335



Basic Information


Item Value
RNA id TU191335
length 798
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G151968
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 535895 ~ 536692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTCTGACGAGcgccaacacacacagcaccagaGTCCCGCGGCGGATCCGGCGAGGGGTCATCGTAGACACCCCAGTAAATCCacagggaggaaaacaaaatcaagcacCTCTGGAGAGCGACGCGCTGAAGTTTGAGCGGTTACAGCCCGCGATCCTGAACTTCAGCCGTGGATCCGGGGGCAGCGGGCTCCCTGCGTTGGGATGCGCCTCAATCAATGAGCCTTGAGAGAGAAATAACAGGGGCTGGGGGGGGTCATCTTCCGCCACCAAAACACAAAGGCACGCAgggttgggggttggggggggatcCAAGGCGTGTGAAAAGTATCCGGATCAGGATCCCACAATTATGTCCCACTCCTCCCGACTGAAGCTGTTCACTCCGGCGGGCTGTGGGAAGCCCACTCGCGACCAGGGGCAACTGTAATCCTCGGGGGGACAGTCTGCGAAGGAAAGAAACACATTGTATTAGACGCGTCCTGGGCGCACAGTCCACAGCCCCCGCACCACGCAGGCAGCTCGGCTCTATTGTTCGCTCGTTTATGGTCCAGTGATGTGAGCAGACCGGGCTGATCCACAGCAGGGCGACGGAAATGCCCGTCCCGCACGCACTCCTCTCCGGGACAAAGCCTGGCGCACTGTGGGCAACTTTCACACGGCGGTGCCACCCGGAGCTCCTGCAGCAACAAACCAGGGTCCACTGTGCGCCTCCCGTGGGCTTGAGCTTGTGTTGAGGGAGCACAGCGAGCCGGCGTGTGGGCATCCACCCAGCGCAAAATCCACTGCCGACCCCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191331 lncRNA upstream 175603 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 180035 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 287776 175252 ~ 248119 (+) True G151941
TU191290 lncRNA upstream 424486 108376 ~ 111409 (+) True G151938
TU191235 lncRNA upstream 499502 35764 ~ 36393 (+) True G151896
TU191346 lncRNA downstream 153967 690659 ~ 690936 (+) True G151978
TU191435 lncRNA downstream 477386 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 520493 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 708339 1245031 ~ 1253959 (+) True G152111
TU191630 lncRNA downstream 921462 1458154 ~ 1458747 (+) True G152196
AMCG00005393 mRNA upstream 277093 257084 ~ 258802 (+) True AMCG00005393
AMCG00005392 mRNA upstream 278849 255058 ~ 257046 (+) True AMCG00005392
AMCG00005402 mRNA upstream 444368 90255 ~ 91527 (+) True AMCG00005402
AMCG00005403 mRNA upstream 454626 76221 ~ 81269 (+) True AMCG00005403
AMCG00005404 mRNA upstream 460326 68283 ~ 75569 (+) True AMCG00005404
AMCG00005448 mRNA downstream 342275 878967 ~ 904620 (+) True AMCG00005448
AMCG00005451 mRNA downstream 370136 906828 ~ 925853 (+) True AMCG00005451
AMCG00005452 mRNA downstream 389506 926198 ~ 933420 (+) True AMCG00005452
AMCG00005449 mRNA downstream 399042 935734 ~ 947232 (+) True AMCG00005449
AMCG00005453 mRNA downstream 416538 953230 ~ 956421 (+) True AMCG00005453
TU191334 other upstream 136030 398925 ~ 399865 (+) True G151967
TU191336 other downstream 59 536751 ~ 537363 (+) True G151969
TU191585 other downstream 830322 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 839776 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 1209268 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 1263119 1799811 ~ 1803903 (+) True G152337

Expression Profile