RNA id: TU191340


Basic Information

Item Value
RNA id TU191340
length 359
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G151972
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 377355 ~ 377713 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctgaagctgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttggccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcgctgtgtgttctgacacctttctatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191337 lncRNA downstream 27033 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 45011 242154 ~ 332344 (-) True G151957
TU191313 lncRNA downstream 264943 108398 ~ 112412 (-) True AMCG00005400
TU191281 lncRNA downstream 277685 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA downstream 277685 95121 ~ 99670 (-) False AMCG00005399
TU191347 lncRNA upstream 312946 690659 ~ 690942 (-) True G151979
TU191479 lncRNA upstream 620641 998354 ~ 1009739 (-) True G152071
TU191494 lncRNA upstream 687746 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 841614 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 841614 1219327 ~ 1258926 (-) True G152133
AMCG00005391 mRNA downstream 2343 350765 ~ 375012 (-) True AMCG00005391
AMCG00005395 mRNA downstream 109665 260508 ~ 267690 (-) True AMCG00005395
AMCG00005394 mRNA downstream 126182 248099 ~ 251173 (-) True AMCG00005394
AMCG00005396 mRNA downstream 144980 227258 ~ 232375 (-) True AMCG00005396
AMCG00005401 mRNA downstream 226241 148035 ~ 151114 (-) True AMCG00005401
AMCG00005387 mRNA upstream 21207 398920 ~ 400797 (-) True AMCG00005387
AMCG00005388 mRNA upstream 493444 871157 ~ 873005 (-) True AMCG00005388
AMCG00005454 mRNA upstream 593958 971671 ~ 973719 (-) True AMCG00005454
AMCG00005474 mRNA upstream 636939 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005476 mRNA upstream 645322 1023035 ~ 1027249 (-) True AMCG00005476
TU191268 other downstream 313627 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 841614 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 993670 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1128227 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1235060 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1330970 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile