RNA id: TU191346


Basic Information

Item Value
RNA id TU191346
length 278
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G151978
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 690659 ~ 690936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtgtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagaccagctactgtagctcaaattgctgaaaaagctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191335 lncRNA upstream 153967 535895 ~ 536692 (+) True G151968
TU191331 lncRNA upstream 330367 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 334799 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 442540 175252 ~ 248119 (+) True G151941
TU191290 lncRNA upstream 579250 108376 ~ 111409 (+) True G151938
TU191435 lncRNA downstream 323142 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 366249 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 554095 1245031 ~ 1253959 (+) True G152111
TU191630 lncRNA downstream 767218 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 770788 1461724 ~ 1461939 (+) True G152198
AMCG00005393 mRNA upstream 431857 257084 ~ 258802 (+) True AMCG00005393
AMCG00005392 mRNA upstream 433613 255058 ~ 257046 (+) True AMCG00005392
AMCG00005402 mRNA upstream 599132 90255 ~ 91527 (+) True AMCG00005402
AMCG00005403 mRNA upstream 609390 76221 ~ 81269 (+) True AMCG00005403
AMCG00005404 mRNA upstream 615090 68283 ~ 75569 (+) True AMCG00005404
AMCG00005448 mRNA downstream 188031 878967 ~ 904620 (+) True AMCG00005448
AMCG00005451 mRNA downstream 215892 906828 ~ 925853 (+) True AMCG00005451
AMCG00005452 mRNA downstream 235262 926198 ~ 933420 (+) True AMCG00005452
AMCG00005449 mRNA downstream 244798 935734 ~ 947232 (+) True AMCG00005449
AMCG00005453 mRNA downstream 262294 953230 ~ 956421 (+) True AMCG00005453
TU191336 other upstream 153296 536751 ~ 537363 (+) True G151969
TU191334 other upstream 290794 398925 ~ 399865 (+) True G151967
TU191585 other downstream 676078 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 685532 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 1055024 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 1108875 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1812974 2503910 ~ 2510676 (+) True AMCG00005481

Expression Profile