RNA id: TU191479


Basic Information

Item Value
RNA id TU191479
length 1192
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G152071
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 998354 ~ 1009739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaatattgtgtggTTACAGTTTTATGGCGCTCTAGACAGCTGTAAGATAAACCCCTGGAATAGAGAGTCCTTCTGGTACTTAAAGCAGAGGAAACTGCATTTCCGTTGATAGCAACCGTTTGCAAAGTGAAGTACGGCTTTGATTTCTTCAGTGACTTGTTATATTTCCACAACTGCAGGGGCAGTGGGCACGgggacacacagGGGACACACAGAGGTACGCACTGGGACACAAGgagacgcacagacacagagggacacacagggaCTCAAGGGGACATACAGAGGTACACACTGGGACACaaggagacacacagacacacagggacacagacacCTCTGAAACCAGCACGGCCATCTACTGAACCGCAGCGCTCACAATCACAGCACCGCCCACCACGACACGGCACCTACAGAACACCGGCTCGGACACGCGTCCCCCCGTCACACGAGCCGTTTCAGAacagattcttttttttaatgttttttcttcttttcttataagagagataaaataataaaaatatacatttacaattatacgATGGCACAGACGCTGAATAAACAGCCCTAACAGCTACTGTAAATAGTGGTGTACGGAGTGGTTACACAAACACGAACGAGTGGACTGACGCTTCAAGGAACCGCTTCGTCCCCCCGGCTCCTGTGGCCCCGCGCCGGCCcctcaccaccccccccccacggGCTCTTCACCGCTCGGCGGTCCTGGAATCAAAAGCCTCTCTCTGTTTTGGCATGAAGGGTTTACCAGTGCGAGAAATAACCATCAAGGCAGAGAGGAGCAGGTGAAGGCAGAGCTGCATGGGGGGGAATCAGGGGCGGAGCCGGGGGGGTCCGCGGCTCACACTCACAAGAACTTCTCTCGCATGAAACATCGGTGCCTCGGCTCGAGGAAATggaaggaggaaaacaaaggtACAATAagaacatgttaaaaaaatgaaaacaaaacaaaaaacatctgtagTTTATTCGTTCACCCTGGGAGGTGGAGGGcacagcgggggggggggcgtcGCTCTTGGCAGATGGTTCTAGTTCTTCAGGACGGAATCGTACACCTGGTACACGTACTGGGACACCTCGGGGGCCCGGCACTTCAGCGAcaactgagacagagagagagagagagagagagggagatcaAAATCATACACTCTTCCAGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191347 lncRNA downstream 307412 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 620641 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 648032 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 666010 242154 ~ 332344 (-) True G151957
TU191313 lncRNA downstream 885942 108398 ~ 112412 (-) True AMCG00005400
TU191494 lncRNA upstream 55720 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 209588 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 209588 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 247558 1257297 ~ 1335440 (-) False G152133
TU191612 lncRNA upstream 387602 1397341 ~ 1398392 (-) True G152178
AMCG00005454 mRNA downstream 24635 971671 ~ 973719 (-) True AMCG00005454
AMCG00005388 mRNA downstream 125349 871157 ~ 873005 (-) True AMCG00005388
AMCG00005387 mRNA downstream 597557 398920 ~ 400797 (-) True AMCG00005387
AMCG00005391 mRNA downstream 623342 350765 ~ 375012 (-) True AMCG00005391
AMCG00005395 mRNA downstream 730664 260508 ~ 267690 (-) True AMCG00005395
AMCG00005474 mRNA upstream 4913 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005476 mRNA upstream 13296 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005475 mRNA upstream 26357 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005473 mRNA upstream 49514 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005389 mRNA upstream 99862 1109601 ~ 1111890 (-) True AMCG00005389
TU191268 other downstream 934626 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 209588 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 361644 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 496201 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 603034 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 698944 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile