RNA id: TU191558


Basic Information

Item Value
RNA id TU191558
length 837
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G152133
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1219327 ~ 1335440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATTGCTTAACTTTTATATTGTGCTACAGCAGAGAGGGAAAGCGTTTTGCAATCAGGAAAACAGCACAGACAGCatcttgaaaaagaaaaagaaaaacaacaacacaaaacagggTCAGAAAGTGTTGGGCTTCGGAAAACGCCTGAAACAAACACCTCGGAGCGGGAGCGTCTCTGGAGTTGCTGCGGAGGGAGTCTCAACAGCGCTGCACTGTGAACCGTGTGCGACTCGAGTTGTGTAACTGGCCCCCGAGTCGGCGTCTCACGGAGCCCAATCTGACCCGGAGGACAAACGGCACTTCCTCTCGGGATTTAAATATCGCCCGCATGCAGGATTATAATGTCTATCCAATAACTAGCGTACAATTCACCCtgaacagcaacacacacagacacaccgcAGCGGGTGAGAGGAGGCTGAGCCCAACGCGGGTGACAAAATCAACGTCTCTCCCTCCTCATGGGTCTCTCTCTGCCCAGTGTTCCTctagcgtgtgtgtgtgtagtgtgtgtgtctgtgcgtgtagtgtgtatgtctgtgtgtgtgcgtgtgtgtgcgtgtgtagtgtgagtgtagtgtgcgtgtgtagtgtgagtgtgtgtctgtggtgtgtgtctgtgcgtgtgtagtgtgagtgtgtagtgtgagtgtagtgtgagtgtgtgtgtgtgtgtgtgtggtgtgggtgagggggtgtgtgtggaggtgccccccacccccgggtCGGGACTCACCGCTCAGCTCGCTGCTGGCGATGCGCAGGCTAGCACTCTCGGACTGCAGCGCGCGGTTCTTCTCCAGCAGCAGAACTTCCAGGGGCTTGGAGGAGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191494 lncRNA downstream 148671 1065459 ~ 1070656 (-) True G152085
TU191479 lncRNA downstream 209588 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 528385 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 841614 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 869005 346997 ~ 350322 (-) True G151970
TU191612 lncRNA upstream 138415 1397341 ~ 1398392 (-) True G152178
TU191631 lncRNA upstream 199311 1458237 ~ 1458662 (-) True G152197
TU191735 lncRNA upstream 262816 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 308192 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 433823 1692749 ~ 1693555 (-) True G152320
AMCG00005389 mRNA downstream 107437 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005473 mRNA downstream 156532 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005475 mRNA downstream 167919 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005476 mRNA downstream 192078 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005474 mRNA downstream 198210 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005417 mRNA upstream 40440 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005419 mRNA upstream 112416 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005427 mRNA upstream 172978 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005428 mRNA upstream 203306 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005426 mRNA upstream 221250 1480176 ~ 1485828 (-) True AMCG00005426
TU191268 other downstream 1155599 62621 ~ 63728 (-) False AMCG00005407
TU191607 other upstream 112457 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 247014 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 353847 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 449757 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 938428 2197354 ~ 2329684 (-) False AMCG00005532

Expression Profile