RNA id: TU191585



Basic Information


Item Value
RNA id TU191585
length 489
RNA type TUCP
GC content 0.53
exon number 3
gene id G152159
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1367014 ~ 1367956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAAGGTCATCCTGATCCAGGCCTGCCGAGGAGAAGGAGCTGGTCACTCCTGGGTCAGCGACTCTGTGCCCCTGGAGCCGCAGTACGAGGACGACTCCCTGATGAAGCGTCACAAAGAGAAGGACTTCATCTGCCTGTGCTCCAGCACTCCCGAAAACAAGTCCTACAGAAGCATTGTGGACGGGACACCGTTTGTCCGGCACATTGTGGAGATCTTTTACAACAACGCCCATAAGGACCATGTGGACGAGCTCTTCAGACAGGTGAGCAGTTTACCCGTCAAACTTGAATTAAGCACCACAAAATCACCAGCGGTCAGAGGCATTTGGCAGGGTCCACTGGAAACGTGTGTGTGTTAAGTGAAACCCCTGTCATGTAACACCGGCGATGCTGCTGTGAGAAGACGTTGCTCTTCAGTGCGAGTGCTCGATAAGAAAGGCAGTTATTTTCAAAGTGacctgacacacatacacacacgtgcCACGTTCG

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191523 lncRNA upstream 113055 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 309619 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 352634 1014078 ~ 1014380 (+) True G152040
TU191346 lncRNA upstream 676078 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 830322 535895 ~ 536692 (+) True G151968
TU191630 lncRNA downstream 90198 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 93768 1461724 ~ 1461939 (+) True G152198
TU191670 lncRNA downstream 141546 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 561499 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 887409 2255365 ~ 2323345 (+) True G152397
AMCG00005416 mRNA upstream 7491 1342760 ~ 1359523 (+) True AMCG00005416
AMCG00005412 mRNA upstream 44419 1321808 ~ 1322595 (+) True AMCG00005412
AMCG00005414 mRNA upstream 61942 1301037 ~ 1305072 (+) True AMCG00005414
AMCG00005415 mRNA upstream 71566 1284287 ~ 1295448 (+) True AMCG00005415
AMCG00005411 mRNA upstream 108889 1255042 ~ 1258125 (+) True AMCG00005411
AMCG00005418 mRNA downstream 8820 1376776 ~ 1378884 (+) False AMCG00005418
AMCG00005413 mRNA downstream 13785 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005424 mRNA downstream 20732 1388688 ~ 1402701 (+) True AMCG00005424
AMCG00005425 mRNA downstream 35090 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005422 mRNA downstream 40477 1408433 ~ 1425336 (+) True AMCG00005422
TU191336 other upstream 829651 536751 ~ 537363 (+) True G151969
TU191334 other upstream 967149 398925 ~ 399865 (+) True G151967
TU191589 other downstream 8512 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 378004 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 431855 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1135954 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1136037 2503993 ~ 2510676 (+) False AMCG00005481

Expression Profile