RNA id: TU191612


Basic Information

Item Value
RNA id TU191612
length 1024
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G152178
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1397341 ~ 1398392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCACCTTCTTGTTGGCCATGCCGTCGATGAAGACGCGGCACTGCTTGAGGATCTCGCGTCCCGGCTTCAGGTTCTTCAGGAATTCCTGGAAGTCCCGGGACACGCGGTCCGTCTCCAGGCTTGCCTGCCGGCTGATGGACGGACTGGGCGTCTTGGCTTCCTGGCTCTCTGTGGGGGAACAAGGAGCGGCAGAGCTCAACCCCCTGCAGGACTGCGCCGAGGGTCTGGGCATGGGGGGCCGCGCTCACACACAGGGGGGACACGGCCTGAGTGAACTGGAGAGCTACGCCCCTGGAGCTAAGACCCCTGGAGACGGGCCGACTCGCAGGGCACTATAGAGGCGGAGGGTGATCTACTGTGGCaggggacagacagagggacagacaacACCCACCTCTCAGTCTGGTCACCAGCGCTGCACCGGCAAACGTGACAGGACGAAACCAAACAATGCGACAGTGAACAGGCGGCACACCACAGTGACAAACAGGACGAACCACACGGCATCCCAGCCACACACATCCCCCGCTCACCCGCCCAGCCCAGCACCATAACACGGCAATTGTTTTTtgtgacaaagtacaaaatcttaaaattaaattatgcacATCAATAACCAGATCCATGCAATTTCACAGAAACACTGGCAGTGCCTTCGTTATGTATAAttcagcacacacactgcaatcaCACACGCACTGCaatcacacgcacacgcactgcAAACACACTGCAATCACACatgcactgcaaacacacacgcacacgcactgcAAACACACTGCAATCACACACGCACTGCAAACACACTGCAATCACACAtgcactgcaaacacacacgcactgcaAACACACTGCAATCACACACGCACTGCAATCACACACTGCAAtcacacacgcgcacgcactgcaatcacacacacacgtgctgCAATCACACACTGCAAtcacacacgcgcacacgcacTGTAaccacacgcacacgcactggCAGTGCCTTTGTTATGTTTAATTCAGCACAC

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191552 lncRNA downstream 61901 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 138415 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA downstream 138415 1219327 ~ 1258926 (-) True G152133
TU191494 lncRNA downstream 326685 1065459 ~ 1070656 (-) True G152085
TU191479 lncRNA downstream 387602 998354 ~ 1009739 (-) True G152071
TU191631 lncRNA upstream 59845 1458237 ~ 1458662 (-) True G152197
TU191735 lncRNA upstream 123350 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 168726 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 294357 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 347561 1745953 ~ 1752738 (-) True G152335
AMCG00005419 mRNA downstream 20868 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005417 mRNA downstream 96794 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005389 mRNA downstream 285451 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005473 mRNA downstream 334546 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005475 mRNA downstream 345933 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005427 mRNA upstream 33512 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005428 mRNA upstream 63840 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005426 mRNA upstream 81784 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005440 mRNA upstream 119091 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005439 mRNA upstream 125268 1523660 ~ 1536868 (-) True AMCG00005439
TU191607 other downstream 25604 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 138415 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1333613 62621 ~ 63728 (-) False AMCG00005407
TU191743 other upstream 107548 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 214381 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 310291 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 798962 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1476894 2875286 ~ 2876009 (-) False AMCG00005491

Expression Profile