RNA id: TU191630



Basic Information


Item Value
RNA id TU191630
length 594
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G152196
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1458154 ~ 1458747 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gaaaaggttcaggtcctcagtctctcagagtaGGTTACATCTTAGCTCAGAGTCATCACCAGCGCTTTGTCTCTCGTTTCCAGGGTCAAGGCTTCAGAGATGTCCCATCTCCCGACCCTCCGCCGACCTCCACGGGCCCCTGCGTGACCCCGACTGGATCGGCTGTGAACTGGCGCAAGCGTCCGCGCACGGAGGAGGGAGAACCCCTGGGAGACTGAGCCCACCGGACCCCTCTGCATCCCGGACGCACACAGGGCCTCGTGGTTTATGGCTGTGACTTACTAAGGGATACAGTTTGTCCCCAATGCGAAAAACTGAAGGACGTCACTGTGGAGAGAAGAcgagctttttgttttgtcgtTTCATTGTTTGTTCCGATGCTGTTGGACATCTTTGTGCAGGTGAACATGTGGACGTCCGACACGctggaattaaataaatgcaggtTCGGTGATTCCACAGTCGGCCTCGGTGTCGTTCACTCTGCTGGGTACCAGACAAGGGTCAAGCGGCGAGTCGGGCTGGACCCTCGCAGTCCCGCTCGCAGCTCCAAAAGCAGAACCTCCCCTCGGCAGAGATCCACATTCCCAACGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191523 lncRNA upstream 204195 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 400759 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 443774 1014078 ~ 1014380 (+) True G152040
TU191346 lncRNA upstream 767218 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 921462 535895 ~ 536692 (+) True G151968
TU191632 lncRNA downstream 2977 1461724 ~ 1461939 (+) True G152198
TU191670 lncRNA downstream 50755 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 470708 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 796618 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1613203 3071950 ~ 3090655 (+) True G152644
AMCG00005422 mRNA upstream 32818 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005425 mRNA upstream 51617 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005424 mRNA upstream 55453 1388688 ~ 1402701 (+) True AMCG00005424
AMCG00005413 mRNA upstream 73564 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005418 mRNA upstream 79270 1376776 ~ 1378884 (+) False AMCG00005418
AMCG00005423 mRNA downstream 10429 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005437 mRNA downstream 27466 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005436 mRNA downstream 32724 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005435 mRNA downstream 38105 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005434 mRNA downstream 54456 1513203 ~ 1517580 (+) True AMCG00005434
TU191589 other upstream 78852 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 90198 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 920791 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1058289 398925 ~ 399865 (+) True G151967
TU191729 other downstream 287213 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 341064 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1045163 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1045246 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1386470 2845217 ~ 2849608 (+) True G152588

Expression Profile