RNA id: TU191734


Basic Information

Item Value
RNA id TU191734
length 2661
RNA type TUCP
GC content 0.53
exon number 2
gene id G152271
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1521742 ~ 1615497 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGATCACTTAAACAATGAAGACTTATTTGGGAATCAAGCTACACAAAACTggactttatttattcatttatttgcagaaaagaTAAGAAATAGGCCAAAGGAGAGGCGGTTCAGTGTATTGTTTCCGTTGTAATATTCATTAGGTTGTTCCCATCATTAGGATTCTAAAAATCAGCTGTGCTGGTCactggggggccacagtgtccCCCTACCCAAAACAAACCTCTGCAGCAGCCCCAGGAATAGCAGGGTGGGGCTCAGATGAGTAAAATGCAGTTGAAGCCTCTTCTGAGAAACAGCAGGGTGTGTAAAATAAACGGTTTTCCAAGCCGCTGCACTGCAAAGAcctgcaacacaacaacactgcaGGAGTGCGCCGGTTGTGTAGTCTTggcctcccccccaccctcggCAGACTGGACCCAGAAGGGAAGAGGAGCAACAGACCATTACATCCAGAAGAACTGTGCTGCGGCTACAGCAGATGTTTTATAGATGTGGGaagaaaactttttttgaatatataaaaaaaaaaaggtttatttaacaGTTCGGCCATTATGTCAACAACTgaatatttagaaataaagaaaataacaacaaaaatagtcGTCTTGCGGTTCTAACAGAGATTCATCTCCAAGTGCTGTTTCTGTAGACCGGGGGCTCGGCTCGGGGGCGACTGGTCGCTTGaatggggaggtgggggagataataatacaaaacaataatacaggGTGTCGTCTCACACAGGGCAGCGCAGCTACGCTCTGGCAGGGGTGGCAGTGTCCAAGTGCTCTGTCCTTTCAGAAGCTCTCGGCTCATTTCTGGACTGTATGTCCCGGCTCTCCAGAGGCCGATGGCGAGACTCAACCCCCCCCTGCAGGACCGCAGCTGGACACCCCTGAGCAAGAGCCACATGGCAGGGTCTGGTCACTAGTCCACatacaactaaacaaaacacaatcctTGTCTAAGGAAGGCGCCTCCACATGGTGCCGCGAACAGCAGGGTGGGGGGCTGCGGCGAGAGGCCATCAGTGCGCACAGAGCACCCTGGGCTTGGAGATGCATCTGCACAGGGCCGTCACGTCAGAACCCCCCCCGCACAGTCTGCCCTCCAACGCTCACAACTTCGTggcaaaaaacaacatacacaaGTGAGCAAATGCACCAGTACAGCAGCACCACAAAACCACCAGATGATACAGGGCCTGCGCTGGGCGGCTGGGGTCGGGGAGAGGACAGGCTGGGGTGTCTGCGattcttattaatattcctccccccaccccccattgtGTGCCACTGATTGCATGAGCTATACAAAGTGCTCCAATACACATCTACACAGACCCACATCGCTGCCCGTCAGATCTCACTGACGGAGAagggaagaggaaaaaaaaaaaacatgaaggcGAGGGGgggcattttatattaaatgtaaattttctGTCCAAATGTTGAGCGCTGCAGGGCACAGCTGGAAAGTGCCTTTTAAACTGATCCCTGAGAACCAGGCGGATGAGACCGTCTGTGCTGCTATCCAAGGGGACAGATCGGACCCAGGGGCGTGCCAGCGGAACCAGGGGCTGGGACAGCCTGTGCACAGCAGGGACACTCATCGTCTCGGGGGGGGTGGGTGGATTACAATTTTGAAGAGCGTTTGACTGGAATGGGTCCAGACGGCCACTGATTCCTGTCAGCCCCGAGGATCTCAGAAGCTCCcataggggaaaaaataaaaataaaatggcaaggGGGGGGAAGGGGACTGGCTGGCACCAAACTGCCCAAATCAGAGCGCACTCCGCAGGGAGAGCCTGTCCCCACCCACACCGCCAACCCGGCACGGCCCTGGCCAGAGCGCTCACAGCTGGAGCCGAGAGACGGGACGCCGGAGTCTCACgcagcaaattaaaacaaaaagcaggagCACAATTCCTCACAGCTGCTCGTCCACACGGAGAGACAAAGACATCAATTAGGTCTGCTGGTGACGAGGGGAAACGGAAATTAACACGACAAATCAAGACTGGTTCAGTTCGACTTCACGCCGCCGATTCTCTGCGAGGTGACGgtgaattaaaacaatcataataaaaataatctctaAGAGCTCCGGAGGTTCTCCTCAGTGTCTCTCCGGCACCGCGCTCGCTATCTTGGTCAGGACAAAACCCAAAAGAACAGCTCACCAGTAATCACgttacaaatataaatcagttCTCCAACTTatgaacagaaaagaaaagaaaaaattacAATTGAGAATCCAGTCAGATAACGTCGAACAGAGGCGGAGAGGATCCCCCCCCACTAAACACAGCTGTGACCGAGCCCCTCGGCCGGGAGGCTCATTGGCAGCGTTTTTGCCTTTTCCGTTTGGAAAGTCGCTGGTCGGCCGCGTCGTCCTCCTCGCCGCTCTCCCCCCGAGCCCCTCTCTTGCTGTGCCGAGTTCTGCAGCTCTCTCggggctcctcctcctcctcctccccctcctgctgctgctgctcttcctcgctctcctcctcctcctcctcttcctcttggGGCGGCCTGCGTGTGGCCTGCCTCCTCTTGCCGCTGGCCTCCCGCTCGCTGTCGCTCTCCTGCTCTCGGTAATCCCTCGAGGCGGCCGCGGCTCGTTTGCTTTTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191735 lncRNA downstream 42595 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 154111 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 214381 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 277333 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 353847 1219327 ~ 1258926 (-) False G152133
TU191799 lncRNA upstream 77252 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 130456 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 325526 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 552107 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 679336 2294833 ~ 2300752 (-) False G152452
AMCG00005438 mRNA downstream 38017 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005439 mRNA downstream 75905 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005440 mRNA downstream 89488 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005426 mRNA downstream 126945 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005428 mRNA downstream 144898 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005445 mRNA upstream 20248 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005446 mRNA upstream 44530 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005447 mRNA upstream 59747 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005460 mRNA upstream 81780 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005461 mRNA upstream 93190 1708687 ~ 1723500 (-) False AMCG00005461
TU191743 other downstream 105145 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 241036 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 353847 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1549045 62621 ~ 63728 (-) False AMCG00005407
TU191793 other upstream 93186 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 581857 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1259789 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1456363 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2673168 4288665 ~ 4289892 (-) False AMCG00005539

Expression Profile