RNA id: TU191743


Basic Information

Item Value
RNA id TU191743
length 1689
RNA type TUCP
GC content 0.46
exon number 1
gene id G152277
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1505940 ~ 1507628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGTTTAAAACGTTTATTTACAGCTTCAGTACTAATCAATTTGCGTTATGCCTCGCCGATACAGACTGCGTACATGTATAAGACGTGTTcgggtttgtgtttgtgcacacTACTGCGGTGAAAGACTGCGGCTCCGTACGACGAGCCAAGCGTGGCTGAACACCGACGAGAGATGGACAGGGCGGCTCGCTGGGGGTGTCCGAGTTCCCAGCATTCCCCCGGTTACAGCGAGACCCCCGAGTGTCAGGATGGTCGCGTTGCCAGACAGCGGACAGCTCTGCGTGGAGGCCGGCGTCAGGCCTGGGGAGCCGTTTTGTTCGCATTGAAGCCGAGATCCTAGTCAGACTACAACTTCCGTTTCCTTAATTGCTCCATGGATTTGTCTCCCAGTACTCTCACAAATCCAGTGGTTCAAGATTTTCAGCCACCTGTCTCAGACTTCATGAACTTGAAACGTTCTAGGAGACAATAACACATAAACGCTATGTTGTTAGGGATTCAATTCAATTAGCTGGAGGCTCAGTTggaatatatacacagtacCGGTCAAAAGTGTTAGaccacctacatttttccagtttttattgaaatttacacagttgaATGTCTcaaatgtactctgaaattaaagcatagaacaaataaacaattgggagataaaaaataaatcatggaatcgttttgtttaagaaaatgtaacctCTTAAGtggacaaacccctctggtaccctatTCTGGAaccagtctactgatcaaaacaagaccatccacgttttggtagaagcaacacacacccgtagagagctcaacatgtcaagatggaaaactctgttcacagtgtactaatacacaacgattttacataattggatctgaacttctctgtgtttgatagaacatgaAATactatatactggattaatcgttaggttgttctgaacaaaacaagccaatttgcaaagaaatcctgatcaaaactgagtgatctgtgaccgtctgaataaGACCACCCCGGAGCACACTGTGCGTTTcccccccaggctctgaatgatggtggGCGACACGGACACTgtgaatcggatgtgtttgagaatgagaCGCGCTGGaggccaagagaataagctttcaaatgatgtgcgcattgtaggaatagtgtcacttctatgcacaggagctgcgtgtcacactgccaaataatgcttaagagggcaTAGTAGTGAAGCCCACAGGTTCTGTGTTCGGTCACAGGTAGGGTAGCGTGTTCTTGATTCACTTGGATGAAGAGAAGCCATCAGGGTTCTTGTTCTAGAGCTCAGGGGCTTCAGAGGAAGCAGCGAGTGTCCGACTGTACGTCACCTGAGAGGGGGAGGCTGCTGGGGCAGCTGAGAGAAAGTGGGCCCACAGGGAGACTCTCAGGGTCAGTGCAGACACGGGCCTCAGTGTTGAGCAATAGAAAACCTGCAcaatcgcacacacacactctcactgagtcacacatgcacacacacgcacacacacattatgtagtCACCTGTATTGTACATCTTGGCTCTGAACCTCAGCCTACACGACTCCACAGAGAAGTATCCAATATTTTGAATGCACTTGAGTTTAACAGTCTGCAGCAAACGGTTAAACTACTTCTTAAAatagggatttaaaaaataaaaccaaccacaacaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191631 lncRNA downstream 47278 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 107548 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 170500 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 247014 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA downstream 247014 1219327 ~ 1258926 (-) True G152133
TU191735 lncRNA upstream 14114 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 59490 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 185121 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 238325 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 433395 1941023 ~ 1946800 (-) True G152344
AMCG00005426 mRNA downstream 20112 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005428 mRNA downstream 38065 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005427 mRNA downstream 69632 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005419 mRNA downstream 129467 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005417 mRNA downstream 205393 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005440 mRNA upstream 9855 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005439 mRNA upstream 16032 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005438 mRNA upstream 63125 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005445 mRNA upstream 128117 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005446 mRNA upstream 152399 1660027 ~ 1666365 (-) True AMCG00005446
TU191607 other downstream 134203 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 247014 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1442212 62621 ~ 63728 (-) False AMCG00005407
TU191734 other upstream 105145 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 201055 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 689726 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1367658 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1564232 3071860 ~ 3090714 (-) False G152645

Expression Profile