RNA id: TU191823


Basic Information

Item Value
RNA id TU191823
length 4048
RNA type TUCP
GC content 0.45
exon number 2
gene id G152337
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1799811 ~ 1803903 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCACTTGTACATTTGATAACGGTTAATTACTTTCCTTCgttaatttgcattttcctttgttcTGAAATGGACCAAGCTGCTCGGAGACCTGCCAGCCTTCCTTCACCAGACAGCCTGACCAATCCAGTCAACCTTTTAATTGATCTCCACCCCCCCTCAGAAGCCAAGTTCAGAATATGCTTCCCCATGATATACATTTGGATAGGTTTATATTTCATTCTcttgaaaatattattacattaaaaatataaaatacacaagcaAGGTTTCGAGACTTCTAAAAACATGTTCACctcctaattaaaaaataaaataaaaaaatcctatGTGCAATGTGTTGTTTCATCTCATGTTCCTTGTTTTGTAGGTGTCGGCGTTCACAAAGTGGCAGTTTGGAGGATTTAGAAGTTCAGCTACACAACAGCCAGAACTCAAGTTGGAAGTGCGATGCTGGGAAGAGGTTTAAAGTCAAGGTTATAAACTTGTAACAATAACCAAAACAAGTCTTTATATAACAGGCTTTTGTAATGTGAATTGTCCGCTTTAACTGaattataaaactgtttttgttttgaataagaaaccatttttgttttctttctttttttggttggGGTCGTGGGGCTGCTGCAAATCCCCTCACAACTCCAGATAAACAACAGGTTTACCAACAGATGCCACAAATCCAGTCAACCCCCGAGAGTACAGTGGACTGGACTTCCAGGCCACAGAAAGAATAGGAATGTACCACGAGAGCAGCTATTGTAGGGGGTGACCATGACAGAGGGTTCAACCAGTACAAAACAGCAACCCTTTCTTGAAATTCATCAGTTCAAAAATccacttaataaaataacaaaacatattgctatacatttttaaaaaacagcattCCTTAGTCCATGCCAgcacaaaaactattttaatacttGCTGGTGAAGTGGTATCTGCACAACTATACTTTTAAGACCAGGGAAATAGTATATCTTCTTTATGAGGTGAATCAGTGGCAGGGGATGTGCAGGTGAGGGGGCTGTGACTGACAGTGTGTTCTCAGCCAGGATACTTAAAGTCAGTCGTGCAACACAACATCCATCTTCGGCAGACCTTGACTGACACCAAACACCAGCAAACAGCAAGACTCTGTCCAGACAGCATGATTAACAATCAGTACGCCTCTCTGCAGAGCAGCGCTAGCTTTCTCATTTCACCTCATTAGCCAGTCATACAGAGAGGGAGCATTCAAGACAGGCCAAAATGTCAGATTCACAGAGGTTTtcctatatttaaaattaagagGGAAGGAAACTCCTAACACAACAGCCAAGCCTGGAGAGTGGGCATCCCACTGTGTAAAAAACATCatcaaaataatgataaataggGAACAGcaatgtgcgtgtgtgtatagactgtatatatgcatacatacacacacacacacacgcacacatacagtatagaTGTGCAGATTCTATCTTCAAGCACCTGACCCACTCAGCCACCTAAATAAGCAGCAAACTTGCTACACCAGAGGTACAGTGTGTCTTTAAATCATCAGTTCTCCTAACATTGTAAGTGCTGTGTATCCAAAACGCAGTGAAGCTCTGTGAACAGTAGGGTTCCCACCTCTGATGGACAATAATTCTCGTAACACCATGTCTACAGAAAAAGGCCATAATGCACTTGTGTAAATATCACTTTAACCAGCATGGCAGTTCTCTCGGAGCATCCTTTATGTAGTACAGGCCTAATTTGCCAGTTAGGGGTGTATAAGGGGCAGTACGCATACTCATTTGAATCAAAGTATCATCCTTACAGCTTATCTTCTCACTTAAAACGATAGCAGAAAATCTCCAAAAACGATCCTCATGCGAAAGTATAATACACTGAAATCAGACAGCTGGTTTCATCATGAGAAAATCATTTACCAGTTTTGGGGAATCATGCGCTAAGTGTTGATATTACGCCCCACAAAATAGCACAACTGACCCACTTGAAAGAAAGGCAGCACATGCGCTACATGCTATATACACCTTTCCTCCTATAAATCTATTCACTTCTTATGTGACAGTCCCTGGGATAACCCCACTGTGGGACACCCCTTAGGGTCTTTGCACAATAATGCTGTATATGAGTGACAGGTTGGTTGATCAACACATTATATCCCTTCTATATCACAGCCTCAGAACCCCAAGTCATGGCTTGTGAAGTATAATGAAACGTTGGCTTTCCTTATTCCACAACCCTGTATTAGGATGCTCACGCTTCCTTGCACAGTGTATCATAATATTGTTGTTGGACTGACTTCTCAGAATATTCCCCCCATCTCCACTGAATGGACACTATGGGACTGCTGGACAACTTTAGAGCAAAGAAAGACTGTCTAATACTGAATACATGGACTCTATTGCCCACAGGGTTCAAATGGGCCTCCCAGCCGAAAGTAGAAGAGGACTTCTCTCCTCTTAGACACGCTACTCATGGAGCAGTTTGGTAACCAAGTTTGGCGTTACAGATCATTACACTGTGGACACCGGGTGAAATGGGGTCTAGCTTGAACTCGAGCGATGccctgttttctgtgtgttttttttttgcttcgtATAATGGAAAGATCTTTGTCAGGTAACAGGTAACAGACAATACAGCTTGTCAGAGAACGCGGCATTGGGGACCAGGCGCTCTCTGCTCTCAAGCAAAACTGGGCAGGAATGGAGTAACATAGCAAAGCTCAGAAGTGCCAGAGACGCAGCTCTCTGAATAAACAAGGGCTGtaacatttcacagaaaaacTCAGTTAGATTGTCCTTTTCTTGCAAACTTTGTGTAAGTTAACAAGGGCAAGTAGTGGCTGAAGAAGAAACACAGTTGAAGGCCACAACACGATAGCAAGAtgcctctcgctctctctttctcttgctctctcggTGAAGAGCTCTCTTCATGCCAGCCACAAGTGGGTAAACTGCCTGCCAGCCAAAAGGCAGGAAAAAACTGAGCTGCAGGACACCTTGAGGGGCTGGAGGGGTGGGAGCAGGGGGCGGTGGCCGATGTTCTCAAGTCTGATTGGCTGCCCTGGTCTCCACGTGATCCCCTGTCTCATCTGTCATTGACTGCTTAGGCAAGGGCTGAAGCTGGGATAGGCCGGAGTCGGGGGAGGGCGGCGCAGTGGGACAGctgtcctctccctccttctcttgcTCCTCCTCGGAGACCAAGTCGTCCAGGCTCTCTGAGAGATTGCCGTCGTGGCTGTCCAGGTCGCTCACCTGGCTCTCGCCGAACTCCAGGATGGTGGGCAGGTGGCCTTGTTTGGGGCAGCGCTTACGCAGGCTCACCAGGAAGGGCTGGGGCAGGCAGAAGATGTCCACGTTGTTGCCCAGGTCGATCCAGGTGACGCTGGGGAACTTCTCGGGGTCCTTGAGGGTGTCGGTGAGGTCGCGCAGCACAGCCTTGGTGAGCCGGTTGCCGTTGAGGGACAGCGTGTTGAGCAGGGGCAGGGCGCTCAAGGtgggcagcagctgcaggaagGCCTCGTCCGTCAGTTCGGTGAAACAGAGCTCAACGCTGGACACCCGGCCGGCGTTGCTCTGCAGGTACGAGCTCAGCCTCTCCATGTCCTTCGCGGTCAGTGGGATTCCTGACAGGTCCAGAGAGTTGTTGGGGGGACCACTGGACAAGACTGCTTTAAGACTGGATAggaaagagaaaggagagagagagagttgcaGGTGACATCATAATCAAGTAGCAGTTGTTTGGAGTCTGTCCGAAAAGTGAACATGTTCAcatttttaagtgttaaaaGTGATAACTGGATTCGACAGTGTAATACATTTGCTATACAATtgtaatctttaaaaatacaaacaggcAACACAATGTGCTTTGTATGGTGTTGTCATTTGTTTCAGTGAGGTGGATCCCAAAGTAGATTCTAACAGCTACTTCTGCTTCACATTAAGCACTCAAACGATTTCTCCTCCTGATCCAATGCAAAACTTACCCAAGCCAAGTTAAAAATAcctaacaataatacatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191670 lncRNA upstream 283859 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 337872 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 341064 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 545852 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 742416 1057185 ~ 1057395 (+) True G152053
TU191834 lncRNA downstream 125552 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 451462 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1268047 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1268047 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 1379918 3183821 ~ 3185332 (+) False G152655
AMCG00005457 mRNA upstream 53944 1740671 ~ 1745867 (+) True AMCG00005457
AMCG00005459 mRNA upstream 65742 1724009 ~ 1734069 (+) True AMCG00005459
AMCG00005458 mRNA upstream 102668 1692137 ~ 1697143 (+) True AMCG00005458
AMCG00005441 mRNA upstream 128450 1667718 ~ 1671361 (+) True AMCG00005441
AMCG00005442 mRNA upstream 186735 1598525 ~ 1613076 (+) True AMCG00005442
AMCG00005430 mRNA downstream 93974 1897877 ~ 1908710 (+) True AMCG00005430
AMCG00005429 mRNA downstream 137166 1941069 ~ 1943683 (+) True AMCG00005429
AMCG00005487 mRNA downstream 212113 2016016 ~ 2043288 (+) True AMCG00005487
AMCG00005486 mRNA downstream 245145 2049048 ~ 2055591 (+) True AMCG00005486
AMCG00005456 mRNA downstream 279331 2083234 ~ 2089877 (+) True AMCG00005456
TU191729 other upstream 50877 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 420509 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 431855 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 1262448 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1399946 398925 ~ 399865 (+) True G151967
TU192049 other downstream 700007 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 700090 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1041314 2845217 ~ 2849608 (+) True G152588
TU192254 other downstream 1462839 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 1462839 3266742 ~ 3270839 (+) False AMCG00005498

Expression Profile