RNA id: TU191973


Basic Information

Item Value
RNA id TU191973
length 246
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G152452
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2294833 ~ 2318672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGAGCTTTAATACCGATCAACTACAGAGAGGAGCTGCTCCACATTGTAAAATTAGCAGGACCTGTGTTCATCTCCCAGCTTATGGTCTATATGATAAGCTTCGTTAGCACCGTGTTTTGTGGCCATCTGGGCAAGACCGAGCTAGCTGCTGTTGCGCTGGCCACTGCAGTTATAAATGTTACAGGGATCTCCATTGGATCAGGCTTGTCGTCTGCCTGTGACACACTGATATCTCAGGTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191933 lncRNA downstream 118879 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 348033 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 542095 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 601278 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 679336 1567118 ~ 1615497 (-) True G152271
TU191989 lncRNA upstream 105773 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 114320 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 141359 2442111 ~ 2445097 (-) True G152473
TU192221 lncRNA upstream 771108 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 859305 3160057 ~ 3160364 (-) True G152652
AMCG00005532 mRNA downstream 23510 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005533 mRNA downstream 72057 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005489 mRNA downstream 221537 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005488 mRNA downstream 235580 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005431 mRNA downstream 338773 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005520 mRNA upstream 7926 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005519 mRNA upstream 31103 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005517 mRNA upstream 106407 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005485 mRNA upstream 284098 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 350160 2650912 ~ 2651547 (-) True AMCG00005505
TU191793 other downstream 573631 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 679336 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 787205 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 923096 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 1035907 1219327 ~ 1258926 (-) False G152133
TU192197 other upstream 574534 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 771108 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1987913 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3000017 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3780483 6081235 ~ 6082866 (-) True G153342

Expression Profile