RNA id: TU192000


Basic Information

Item Value
RNA id TU192000
length 2827
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G152473
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2415072 ~ 2445097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTGCAGTGTGAATACAGGTACTATTTTATTGACAAAGACAGTTGTGATTACATGCATGGTGACAGGCATCCTTCCCTCCATTACAAACTAGaaattaagcattacaaaattaaaaattacaaccCAGGTAGCATTTAAGAAATCAAAAAAATCATTTACTTTTCCAAATGATATCTTTGAAATGTTGAAACGGCTGAAACCAAAATCTTTGCACCTTTTCTTTAGCAATGctagaaaataacaaataaaaataaacagcacctgaaaatgtacagaatttaTAAAGAAACAGACACCAtggttacaaaaatattttaaaatactttgctTAAAAAGTGCCATAGTGTTAAAGTTACAAAACATCATTCAGACTTGCTCCAAGACAGCCTTTTTCACTGTGACCACTGATATTGCCAGAACACAAGTCTCATAAATAAGAATCAGACAATTTTTTCCACACAATGCTCTAAATGATCTTTGCAGTAGAGTTTTTATTTCATCTTTAAATATTGCACACAGGGGGATAAGAATCATATTCCACTACAATGGCATACAGCAGTAAACCTAAAGCATTTGTGTTTGGAGTTATCACACGTAAAGTACTCAGACATGTGCTTTGTAACAGTTAACATCTCTCTTTTCAATTTCACGAACAGCAGTGTTAAGTAACAAGTACACCAGTACGTAAGTGATGTTACTAAACCCACGGGAGACAACACCATAAAGCATTGTGAGGCTACATTAAAACTGTGAACAGCCACGTTGAAGGGGGTGgaggaaaatgcaaattacCAGACTTGTTTCCACTTCTTGCACCCAAATGTTATGAGACACGGCACTGAGACACAATACAACTTATTCTGGGGTACAGCGCACTGCTCCACTTTAGGCTTAACAGCCCAGAAGACACTGAATGATAGTTGCCATTGTTTTGCGCcaaatttttaaataaattctctTGCAATTACCTGATACATGACTGTGAGATATGCGTTTATGTTCCACATCAATATCTCCAACAGTTCAGAGTTACTGGTCAGTGAAGACCTCCTAGCCACGAAATAAAGGGAGTGGATGAGAGTGAATCCCAGGTCCAGccaaatgcacacaaacaccaaCCATTTCggtttcttatatttttctaaCACTGCAGTCTTGGAACTGAAATTTTAGGAGACTTGATGTAGAGATTAGGAAGCTAGGTTTGCAACACAAGGTCTGAATTTCAATATTCAACCTTCGCTATGTCAAGAGGAGATATTGGACACGTTTGGCATTGAGGACAGAAGTGTCCATGTGGTTCTGGTGCttctactaaataaataattaggcatgtactgattgttttcattttactgaAATGCTTCggtgaataataaataaaaagactttATCAGAATGCAACCCCCTGAAAACAGGACTCTTCCAAGACCCTCTTATCAGGTCAGGTGACTAACAGtGATAGTGCCACACTGGGGTCCGGGGGTCACCGGGGTGGGCATGTTAATGTGCAGAACTAGTCCCTGCCAAGACTTCATGCAAGGAAAGAACGTAACACAGGGACTCCACCACGACCTTCCTCCTCTGTGTCACCCTCCATATTCACCTCACTCACTCTAGGCATGCGTTCTGTCTATAAAGGCTTGTAAACAGTGTTTGACCGATCAGAGCCTTGGTTAATATTTAAAGGAAGTTCTGATGCATGGTACCAAATCTGCAGACTATCTCGGGTTAATACTCACAATACCATCCCAGTCTCCAATTCTATGAAAACAAACCCCCATTTTCTCTAAAGCCCActaatactgtattttactgtgGTTTAATTTGGAATCACCCCAAAGCTGGACTAAACGAGAACTATTCGCCATctgggggaagaaaacaaaagaaatcaCAGCTGTGAGCCCTAGTACACTTTAACGAGCTATTTCTCAGGAGTCCGATACGAAGACTCCAAGGCCGACTAATGAGCTGTAAATCCCGGAGAGGAGTGGTGACTTCGCCCTCAAACTCTGGTACCGATCTCCCAAAACAGTATTAAGATTTGATCAAAGAATCAACatataaaattgtaaacaaaacagaaccaaaaacaaactgagaaaCATGTCCCCAGCAGTGAAATGTCTTGAACCCAGCCGATCCAGTACAATCCTGCAGTACAGACCCATTCCAAACGACAACACCAAGCGGTACTCTGATAGAGCGAGATATAGAGTCACTATGCGCACACTGCCTTCTGCATTTACACCAGcaaaggagagaagaaaaaaaaaaaagaatagaaaaatgGCAAGGGACATGCTTCTGCTCAGCATATTCACTCCCCATCCCATCCCACTTTCCCTTGAAATAAATCGACCAGCTGGTAGTACAGATTTCAGCATTAAATCACTGCCGGACTGACGGTCATAATTTCCACAGCCTTTCCTGAAGGCCACAGGATGGAgggagagctgtgtgtgtgtgtttgtgtgggggggggcatttAACTTTTTCCAGTGTGACAAATGTCTATCCAAAAAAAccactcttcctctctcacctcTCGTCCCCTCCACTAGGTCAGCTCCGGGCAGCCCCGATGCTGCGAGAGTCACTTCCGCCGGCTGAAGATGCTCTTCTTGCTGGAGCCCTTGTCTGCGGTGCTGAGGCCGATCAGCAGCCTGGCCTTCTCGTCCTCCTCTTGCTGCTGCAGGGTGGTGTCAGACTTGCCGTCCAGCGCCTTGCCCTTGGACTCCGATCCGGACGCCGGCTTCAGCCTCAACTTCTCTTTAATCATCTGTCGAGGGGGGAAGGGAGCACAGGTAAACCAATATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191989 lncRNA downstream 34726 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 123439 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 141359 2294833 ~ 2300752 (-) False G152452
TU191933 lncRNA downstream 266157 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 495311 1941023 ~ 1946800 (-) True G152344
TU192221 lncRNA upstream 626763 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 714960 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 738724 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 756088 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 861589 3306686 ~ 3308431 (-) True G152736
AMCG00005517 mRNA downstream 31864 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005519 mRNA downstream 109215 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005520 mRNA downstream 120468 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005521 mRNA downstream 141257 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005532 mRNA downstream 170788 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005485 mRNA upstream 139753 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 205815 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 238540 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005477 mRNA upstream 321449 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005496 mRNA upstream 366129 2811226 ~ 2821222 (-) True AMCG00005496
TU191946 other downstream 112427 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 720909 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 826614 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 934483 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1070374 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 430189 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 626763 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1843568 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2855672 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3636138 6081235 ~ 6082866 (-) True G153342

Expression Profile