RNA id: TU192219


Basic Information

Item Value
RNA id TU192219
length 309
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G152644
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3071950 ~ 3090655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtgatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcccctttcttgtggattggtttgacatttgctgtcttccagtcagttggcacatcccctgttctaagtgtcatttggaatatttgagttagcggcctataaataatttccctcatttctttaaagtactgttggaaatatcccatctggcccaggtgatttgttggtttttaattctgctagtccctttagtacctcctcctcaattatcctgatctctcttagggtttgactggactggttgttaacctgtggcatgt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 748605 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 1125150 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1555998 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1610011 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1613203 1458154 ~ 1458747 (+) True G152196
TU192232 lncRNA downstream 93166 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 94100 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 94100 3184755 ~ 3185332 (+) False G152655
TU192235 lncRNA downstream 108677 3199332 ~ 3200187 (+) True G152656
TU192236 lncRNA downstream 169555 3260210 ~ 3260429 (+) True G152657
AMCG00005490 mRNA upstream 175281 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005492 mRNA upstream 200077 2866971 ~ 2871873 (+) True AMCG00005492
AMCG00005494 mRNA upstream 214838 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005493 mRNA upstream 227249 2834497 ~ 2844701 (+) True AMCG00005493
AMCG00005502 mRNA upstream 433042 2583399 ~ 2638908 (+) True AMCG00005502
AMCG00005509 mRNA downstream 61026 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005506 mRNA downstream 82924 3173579 ~ 3179680 (+) True AMCG00005506
AMCG00005507 mRNA downstream 110846 3201501 ~ 3202760 (+) True AMCG00005507
AMCG00005508 mRNA downstream 139034 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005498 mRNA downstream 175719 3266374 ~ 3270844 (+) True AMCG00005498
TU192155 other upstream 222342 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 561274 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 561274 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 1268047 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 1323016 1745960 ~ 1748934 (+) True G152267
TU192254 other downstream 176087 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 176087 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1192405 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1469558 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 2124168 5214823 ~ 5221915 (+) False AMCG00005583

Expression Profile