RNA id: TU192229


Basic Information

Item Value
RNA id TU192229
length 308
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G152652
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3160057 ~ 3160364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgacccctgcagaccaggaacaccctacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatgtggcgcttgtcagagtcgctcagatccttacgctgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtgctcataatgttatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192221 lncRNA downstream 69343 3071860 ~ 3090714 (-) True G152645
TU192001 lncRNA downstream 714960 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 714960 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 752672 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 841385 2294833 ~ 2318672 (-) True G152452
TU192240 lncRNA upstream 23457 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 40821 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 146322 3306686 ~ 3308431 (-) True G152736
TU192393 lncRNA upstream 446597 3606961 ~ 3612994 (-) True AMCG00005525
TU192408 lncRNA upstream 538447 3698811 ~ 3725372 (-) True G152793
AMCG00005480 mRNA downstream 8138 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005479 mRNA downstream 154211 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005491 mRNA downstream 269609 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005495 mRNA downstream 296076 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005496 mRNA downstream 338835 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005501 mRNA upstream 189593 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 406473 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005524 mRNA upstream 423037 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005525 mRNA upstream 452488 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005552 mRNA upstream 492271 3652635 ~ 3692107 (-) True AMCG00005552
TU192222 other downstream 69343 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 284048 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 830373 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1438855 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1544560 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 1128301 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2140405 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2920871 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 3329891 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 4625190 7785554 ~ 7788321 (-) True G153733

Expression Profile