RNA id: TU192233


Basic Information

Item Value
RNA id TU192233
length 2234
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G152655
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3183821 ~ 3186988 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAAAAATGTGCATATGAAAACCTAAACTACAAATCTCAATGCACAGCTGCTAAGCAAAGAATCGCCGGTGTAATAAAGAAACGCAAAAAAGTAGgctgtggattttttttgttttggtgccAAGTACATTTTTCTCTTCACATTCACAATGTCCATATTTTGCCTGTCTTCATTCTTATTGGCTTTGCAGCTCCGTAATGCATCTGATTTTATCATGTTTTTCAACCAAACGCATCTGCAGAATGTCAAGTTTGCACACGTTACTAAAATCGCAGAAGGCAATGGCAGTAagattttctttgcttttgtaaaatcatttgaatttgaaaagtCTTCAAGAGCAGAAGCATTCAGCTCAGTCTTGTGTTCGTTCTCCACAAATGCAAtggaatataaatgtattagtttttcttttctttatcatTAACATGTCCTGCAAGTTTCAAACCAATGTAACTCGATTCAAATGACCGTCaaattttaatctttattttgatttttgttcttgttcttgtcattaaaatgcttaagaattattttaaaatcacaccAGCTTGCGCttgtatagtttttttcttttttaatgggGGTTTGAGATCCATTTGACGAACATGAAACCttagggggggaggggggaaatgCAATATGGAATTGTAGTAATTTGAAGgtgttgcatatttattttcctttccgtTGGAGTGTTTACGGGGCACAGATTTGTAGGGGATACGGTGTTGTGAAATCTGATTTGTAAACcaaagctgctgctgctgctgcctggggATTGTATATGAGTCGGAGGCCTTTTTCTTCTGCGCTTTGCTTCTACACGTTCTGCTCAGTGTCTAAAAGTTATGAAACATCTGGATTTTGCACCTGCTTCAAAAACAGCCGGACAAAAAGTAACGCTCACTTTGGTAGTGGAGGCAAAATCCTTGTTGAAAAGCCTGCACACCCCCACAGAGAtgagagcttttttttttttttttttggtgcggTACGAAGGTTCAGCTGAAGTTGTAGtagaaaaaatacagatttcccCGTCTGATCTCTCTTCACATCTGCCCCTCCAGATCTCCAACGTTGTTTTCAGAAAATTGGCAGCAAGTGTTTGATCTGGGGTAAAACTCTTGGCGCATCGAAGCAGTTACTCCCCCAACAGGCTCCAACCATTGTGCATGAAGTTAGTTCAACAAAGCCAACGTGTTTCGAAAACTTTTGTTCGTTTCTCAATGTGGCAGCAATAAggaaaagaaactgaaggaaaaatcTAAAGCTTAATGACTCGGAACGGTGCATCGTTCTTGGCTCAGACCGCTCTCTTCCTATTGCAGGTTCTGCTCCATTTTGCTTCAAGACCATGAGCTAAACAATGGTGTCCATCTAGCCAAAGCAGAATCGGCTGCGATTCATATTCATGCACCCTAGAAAAAACAATCAAGGTTATTAATTTTCCTCGTATTTTGTCTCGTAAGTGCAAAGATGTCTCTGCGTTGAGCTTGTTGTCTGGAAATTCAGTTACTTAAGTCAAGCCAAGGAAGATGGTTGCCGATTAGATTCGGCAGCCCAGTTTCAAGCATAAATGAGGATTTTTTACGTTATAAGCAGCTAATACATGCTAGTGCTGGACCTCCGCATTTTCGAACCCTTTTGTATGTTAAGTGAACCAAGTGGCTTAAAAGACCTCAAAGGCAATGTGAGCTGACGAAGCTCCCGTGAGTCGGTGTAAGTCCAGTCGCCAAATAGCTGCTTGTGTGAAATCGGCCCATCTTGTGCTGTTTATCGACCTTATTTGCTTTTACATCGGTTCCGAAAAGAATACTAAGCTTGGTAAGAGAAAATTAGGCGTCTCGGGACTGTCACTAACGctcgtttttattttgttttatttttcttgaactaCAAAGGAAGGTTTGCAACATTTTCAGCAGACGCTTGGCGACTGCCAGgtcgtttttgttttctattattgtttgtgttggcAGGTGCAAGTTATGTGCACAGAAGATAGCGACTTTTCCTTTGGTTTcgagattttattttgtataggcCAGTCTTCAATCTTTACTGGCAAcagagagatttaaaaataaataaaaaataaacgcgtaaaacagaaaatctaggtttttcaattcttttttttaattttgtaaaaataatttctagcactttgcttttaaaagaaaaatggctTACAATGTCTGCAACCAGTGTCTcgaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192219 lncRNA upstream 94100 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA upstream 94100 3071950 ~ 3090655 (+) False G152644
TU191902 lncRNA upstream 861410 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 1237955 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1668803 1509502 ~ 1515952 (+) False AMCG00005434
TU192235 lncRNA downstream 12344 3199332 ~ 3200187 (+) True G152656
TU192236 lncRNA downstream 73222 3260210 ~ 3260429 (+) True G152657
TU192366 lncRNA downstream 536925 3723913 ~ 3761827 (+) True G152764
TU192522 lncRNA downstream 1071878 4258866 ~ 4260635 (+) True G152866
TU192568 lncRNA downstream 1105042 4292030 ~ 4292882 (+) True G152906
AMCG00005506 mRNA upstream 5075 3173579 ~ 3179680 (+) True AMCG00005506
AMCG00005509 mRNA upstream 12820 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005490 mRNA upstream 288086 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005492 mRNA upstream 312882 2866971 ~ 2871873 (+) True AMCG00005492
AMCG00005494 mRNA upstream 327643 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005507 mRNA downstream 14513 3201501 ~ 3202760 (+) True AMCG00005507
AMCG00005508 mRNA downstream 42701 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005498 mRNA downstream 79386 3266374 ~ 3270844 (+) True AMCG00005498
AMCG00005499 mRNA downstream 97882 3284870 ~ 3295314 (+) True AMCG00005499
AMCG00005500 mRNA downstream 117901 3304889 ~ 3306844 (+) True AMCG00005500
TU192155 other upstream 335147 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 674079 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 674079 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 1380852 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 1435821 1745960 ~ 1748934 (+) True G152267
TU192254 other downstream 79754 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 79754 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1096072 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1373225 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 2027835 5214823 ~ 5221915 (+) False AMCG00005583

Expression Profile