RNA id: TU192240


Basic Information

Item Value
RNA id TU192240
length 865
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G152661
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3183821 ~ 3184685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGAAATCTTGACCTCTCAGAATGTGtcgcacccccacccccataacCGTCACAGGAGGCACTGACAGTaagccacaaaaaacaaaaaaagaaagagcacAGCCCACAATGCAAAATggctaaagttttttttttcccccctcactgtGGATGGGGGTGGGGAGAAGAAAACAGTTCACATTGCAGAAGATTGTTTGGGGGTGAGCATTCCTTTAATAATATCCATTTAGGTAGCATTCTCCTCAAAAACACACCCCGATTTAAATCAGATCAGGAACTGTGCCTTGCTTAACATAACCTAATGGGGGGCTCGCGCACAGCACCACCAATGACCAGGCTATGAGAATATGCTTGCACAGGGGGTAAAACACCTATTGGTGAACCCCAGCAAAAGAAGTGTTATTGAAGCTTTATGACATTCCCCCCCTCTCTGAAATTGCcaacaattaaaagaaaactaaaaaacaatacaaatgggAACAAGGAGGAGACTGCAGGAAAATCAGTGTGAAACCCTGAAACTGGGCACAAAATCCCAAACCACTGCAGCCAGACCCTAGAAGTACATATTCTGTCCATACTGAAATCCAGGACtgatttgcaaaaacaaaaactttaaaaccaaaaaactaaaatatagatGTTTGCATCTGACCAGTCTGCACTGAATACGATTCAGcctttaattcaaatattgaaGTGACTGATTAAAATTTCCTTTCCAACGATAATGTAAcaattaaccattttaaaaggaaaatgccATGATTAAGACCCCCCCCTAATTATTAAAAGTAGTTCTCTATGCTACATTGCTAACAGCagtgaatatttaaatactctgaaacttattaaatgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192229 lncRNA downstream 23457 3160057 ~ 3160364 (-) True G152652
TU192221 lncRNA downstream 93107 3071860 ~ 3090714 (-) True G152645
TU192001 lncRNA downstream 738724 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 738724 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 776436 2406525 ~ 2407385 (-) False AMCG00005517
TU192244 lncRNA upstream 16500 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 122001 3306686 ~ 3308431 (-) True G152736
TU192393 lncRNA upstream 422276 3606961 ~ 3612994 (-) True AMCG00005525
TU192408 lncRNA upstream 514126 3698811 ~ 3725372 (-) True G152793
TU192414 lncRNA upstream 529998 3714683 ~ 3718436 (-) True G152798
AMCG00005480 mRNA downstream 31902 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005479 mRNA downstream 177975 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005491 mRNA downstream 293373 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005495 mRNA downstream 319840 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005496 mRNA downstream 362599 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005501 mRNA upstream 165272 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 382152 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005524 mRNA upstream 398716 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005525 mRNA upstream 428167 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005552 mRNA upstream 467950 3652635 ~ 3692107 (-) True AMCG00005552
TU192222 other downstream 93107 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 307812 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 854137 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1462619 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1568324 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 1103980 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2116084 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2896550 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 3305570 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 4600869 7785554 ~ 7788321 (-) True G153733

Expression Profile