RNA id: TU192244


Basic Information

Item Value
RNA id TU192244
length 503
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G152665
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3201185 ~ 3201687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggcggcggccgtGGAGGCGTGCTGCTGCACCGGGTGCACGGCGGCGGCCGAGCCGGGGTGCAGGTGATGCTGGccggggtggtggtggtgatggagGTGCGGGGGGGGGAGGTGCGGtagctggtggtggtggtgcggGTGATGAGTCGCCACCGCCGAGGCGCCGCCGTTGTATGCAGCCATCATTTTTGCGGCATTGGTCGCCGTTGTTCCGCAAAGAGCCATTCACTtccacaacaacaaccaccccCGAAAACAGAGAAGCACCCCTGTATCCTGATCCGATCAGAGCCAAGACGGGTGAGTGAGGAGGGAGGGGGCCGGGCCGCTGGGTGTCACACGGTCATCGGGCTCGCAGCGGAcacatgcaaagaaaaacaacataaaaagcaGCGGGTGAATTAAAGAAACGTGAGCGGCGTCATCGTGGCCAGAGCCCGGCTCACTCTCTCCCACTTCATGCCCGGACTGACCTACTTCTGCACCCGGACCTCCGCGCCGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192240 lncRNA downstream 16500 3183821 ~ 3184685 (-) True G152661
TU192229 lncRNA downstream 40821 3160057 ~ 3160364 (-) True G152652
TU192221 lncRNA downstream 110471 3071860 ~ 3090714 (-) True G152645
TU192001 lncRNA downstream 756088 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 756088 2442111 ~ 2445097 (-) True G152473
TU192325 lncRNA upstream 104999 3306686 ~ 3308431 (-) True G152736
TU192393 lncRNA upstream 405274 3606961 ~ 3612994 (-) True AMCG00005525
TU192408 lncRNA upstream 497124 3698811 ~ 3725372 (-) True G152793
TU192414 lncRNA upstream 512996 3714683 ~ 3718436 (-) True G152798
TU192431 lncRNA upstream 586521 3788208 ~ 3792444 (-) True G152815
AMCG00005480 mRNA downstream 49266 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005479 mRNA downstream 195339 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005491 mRNA downstream 310737 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005495 mRNA downstream 337204 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005496 mRNA downstream 379963 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005501 mRNA upstream 148270 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 365150 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005524 mRNA upstream 381714 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005525 mRNA upstream 411165 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005552 mRNA upstream 450948 3652635 ~ 3692107 (-) True AMCG00005552
TU192222 other downstream 110471 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 325176 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 871501 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1479983 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1585688 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 1086978 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2099082 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2879548 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 3288568 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 4583867 7785554 ~ 7788321 (-) True G153733

Expression Profile