RNA id: TU192325


Basic Information

Item Value
RNA id TU192325
length 1723
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G152736
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3306686 ~ 3308431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgtattatgtcTAGGACACAGATTAATTCCAGTCAGATTAGGGTTTAATAACACCGCTTCCTCCCACccaaaaaaacagatttcaaatcATTATCTTCATATTGAGTATGAACACAGTATTGCTGGGCTGCtgccttctctctttctttcttcacacTTGTTGGTCTTCTGCCAAGATTATCAGCGGCATAGCACTCCTCAATGAGGCTATACAGCTGGTATATCACCGTTCCATCAAGGCTGTTCCAGCACTTGTGAAATACAGCGTTACACCTAATGGAAATTCAACAGCACATGCACTCATCCTTTACTCCGTTCTTCAACTGTTTCTTGTGATTTACAAGGGGAAAGAATAGAtacataaagatatatataaacattacataACACATGACTTAGGATATTATTTTACTGACAATTTACAAGTGCAAATCATACAATTTGCTGCAGCATCATTTCGGCCGATAGTTCTCAGACATTTGTTCACGCACGGCTTTACAGCATTCCTGTTACGCCCGGCAACAGAAGCCGGTAAACATTGTGCATGGGCTCACAGAGAATTAAAGTAACCGTACAAACAAAGATTATATGGGCTGGTTTCATAGATCCGGCTATGCATTGATCTTGGACTTCTTCAATCATGGCTGTTCACGCCTGGTCCTGTTCACTCcatcttctgcttttcattccaaccCCACTCTCACTTACCTAATTggcaatttaatttacttaaccCGGCTGTTTCATAATTAGATTCCAAGTAGAAACCATTACAGAGGTCTGGTTCAGCATATTATTACATAAGAAAGGATATAAATTAGATGAGGCTATTTGGCCCTTCTAAGCTCTTTAGGTTGCAGGCTAATAACTAATTAATAGTAATTAATAATGATCCGATTATTCTTTCCCGACAATTCTTGAAGGATCCCAGGGtgaatgctttgaaaatatgGCCAGGGAACTtgttcaaattgtatttcaccTAATGTGTCAATAACTTCATAAATCAGAAGACAAAATGAAGATGCACAGTGAGGGATGAAAAcctctgcatttaaatgttattctgGGCCTGATCAGGATGCTGCAAACCAGTAGCAACAGTGAAGGCAAATACAAGTTTTATTGCTATGGCGTCCATGGCTAAAGCGTTCCAGCGGCAGATTGGAGAAAGTGAGGGCAACTGAAAGGTGGATGCTGCTTCTCCCACCCTCACAGTCACGTTTGAGTTGACAAGTTCGCTTTGCCCACTGCAGTCCTACGCAATCCGGTCTCCCCACAGACATACGCCAAGTCAGTCCTAACCCTAGGTTGCAAGAATGTATCAAATGATAAATCAACCTCAAAGCATACGACAGACATATCATCATGGACCTCTCAGAAACTAAGAGGAGGGAGCAGAAATCCACGTAGTAAATGTCAGCATCAACCCTAAAGAGTTCATTTCATaatcctaaaaacaaaaaacgcacTAACGGGGATCACCAAAGTTCTGAGATTGGTCTGAGTGGTGCGGGTGCTGTGTGGTGACTGGTCTTCAGTGTGCTGTTCGGTGTGGTGGTCAGTGGGGTGTCTGTGGTGCTCCAGGGTGCTGCTCCGGTACCTGAGGAGTCTCCATCTGCTTGTCGCCGGGATTGGCCTCCTGCTGCAGCTCTGCCAGCATGTCCTTCAGCTTCATCTCCAGCACGGGGTCCCTGCTCTCGGGCATGGCGCTGTGGGC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192244 lncRNA downstream 104999 3201185 ~ 3201687 (-) True G152665
TU192240 lncRNA downstream 122001 3183821 ~ 3184685 (-) True G152661
TU192229 lncRNA downstream 146322 3160057 ~ 3160364 (-) True G152652
TU192221 lncRNA downstream 215972 3071860 ~ 3090714 (-) True G152645
TU192001 lncRNA downstream 861589 2415072 ~ 2445097 (-) False G152473
TU192393 lncRNA upstream 298530 3606961 ~ 3612994 (-) True AMCG00005525
TU192408 lncRNA upstream 390380 3698811 ~ 3725372 (-) True G152793
TU192414 lncRNA upstream 406252 3714683 ~ 3718436 (-) True G152798
TU192431 lncRNA upstream 479777 3788208 ~ 3792444 (-) True G152815
TU192455 lncRNA upstream 551365 3859796 ~ 3869209 (-) False AMCG00005560
AMCG00005480 mRNA downstream 154767 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005479 mRNA downstream 300840 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005491 mRNA downstream 416238 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005495 mRNA downstream 442705 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005496 mRNA downstream 485464 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005501 mRNA upstream 41526 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 258406 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005524 mRNA upstream 274970 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005525 mRNA upstream 304421 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005552 mRNA upstream 344204 3652635 ~ 3692107 (-) True AMCG00005552
TU192222 other downstream 215972 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 430677 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 977002 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1585484 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1691189 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 980234 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 1992338 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2772804 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 3181824 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 4477123 7785554 ~ 7788321 (-) True G153733

Expression Profile