RNA id: TU192408


Basic Information

Item Value
RNA id TU192408
length 1491
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G152793
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3698811 ~ 3725372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TtcgggtttaaaaaaaaagcttttatttaaatttatttagaGGAGACTTCCAAAGAAAACAGATGGTGGGTGATAAAAGATATACATTCATGTTTATACAAGTGCATACATACAGACTGATTCAAGCACTTTCCTTTTGAAGTCTTGGGCTGTTGGCCATAACACTCTTCAAATTAATGCTTTAACACCCACACTACACTTGGGAGAAAAACATAGGGTTAAACTGTAGTAGCCCAgtagcaaaacaaaactcaaaagaTGTATTCCTTATTGTTTCAATCACAGAACAGATGACTTGGACAGTAAAAGACAAAGCAGTACATGAACAAGCTTcaagttttaaatgtgaatggatgaaaaaaaaaaaaaacaccaactgCCTTGCTTGAATCCTATAAAGTATCTTTGGCATCACTTATGATTTTGAGAATTCACAGTTATTGCCAACATTGTTTCTCTGTATGAGTTACAGTTCAGCATTGCAAagctactaaaaaaaaaaaaacaagaaaccaaaccaaaattttaaaaaagccACCAAAGTTTCCTGACCATCTTGTAAAAGCTccctaaatactaaatactttgaaaatcaaaatgtttgcttttgtttttcaaagagtGTACATTGTGAGAGATCCATAGCTACTTCGGAAatccatttacaaaacaaacatttaaaataaagaccaaTCGCACCACTGCCAGCAATCGACAGCTCATTTACAGCACTGGATGTGGGCAAGATACTATCAGCGTGGTTCCTTTATCTTGCATCACATTCGATTCCTCGGGTTTGAATACTAAAGTAAGCAGCCTTTGTCCCGGTGATGCACACACTTAGACTTAGACTAGATGTAGTTTTACACATTCTCAGCTGTGTGTTATAGACCGCAGATGCCGTCATGGATTATAGTGTTTAGATTGCACTGctgggaaaaaactaaaaactaaattctcacttgcattttgatttagatGAGGCTGCTCAGCAGAACAGACGCACTAACAAATATAAACTACATGAATATTACAATTGTAACCTTAACCTCTTATCGAACGGCAATATTGAAGCTTTCACCTCAGAGAGCACTTAATGAAGAAATAAACCATTTCACATTCCATACTTCCATTGAAGCATTGGTTATTGTCAAGGCTCAGATTGTTTAGCCAGAAAAATAGATCGATTTTAACACTGTATGGTCACGGTGAGCAAACGTTTTGCACTACAAAAAAATGTCATCGATACAGCAGCGCCTCAGATATGGTTCCAGTCCTACGCTGTAGAGGCCGAGCTGGTGGAACACCAACAGAAATGTCTGGCAATTTCTGGACATGTTTCCCAGTGTGCTGGAAATCTTAGGGATCTCTGACACCATGAGTTTAATATTTACAccattaaaacaagaaaataggATTCCTccgcttaaaaaaaaaaaatgtacaggatatatatatatatatatatatatatatNcatatatatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192393 lncRNA downstream 85817 3606961 ~ 3612994 (-) True AMCG00005525
TU192325 lncRNA downstream 390380 3306686 ~ 3308431 (-) True G152736
TU192244 lncRNA downstream 497124 3201185 ~ 3201687 (-) True G152665
TU192240 lncRNA downstream 514126 3183821 ~ 3184685 (-) True G152661
TU192229 lncRNA downstream 538447 3160057 ~ 3160364 (-) True G152652
TU192431 lncRNA upstream 62836 3788208 ~ 3792444 (-) True G152815
TU192455 lncRNA upstream 134424 3859796 ~ 3869209 (-) False AMCG00005560
TU192507 lncRNA upstream 264547 3989919 ~ 3993521 (-) True G152853
TU192551 lncRNA upstream 531849 4257221 ~ 4260312 (-) True G152894
TU192577 lncRNA upstream 566658 4292030 ~ 4300398 (-) True G152915
AMCG00005552 mRNA downstream 6704 3652635 ~ 3692107 (-) True AMCG00005552
AMCG00005525 mRNA downstream 66099 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005524 mRNA downstream 94456 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005497 mRNA downstream 130307 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005501 mRNA downstream 333461 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005561 mRNA upstream 82393 3807765 ~ 3821342 (-) True AMCG00005561
AMCG00005560 mRNA upstream 124764 3850136 ~ 3868456 (-) True AMCG00005560
AMCG00005568 mRNA upstream 278891 4004263 ~ 4019746 (-) True AMCG00005568
AMCG00005539 mRNA upstream 559345 4284717 ~ 4292871 (-) True AMCG00005539
AMCG00005547 mRNA upstream 808768 4534140 ~ 4536045 (-) True AMCG00005547
TU192222 other downstream 608097 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 822802 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 1369127 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1977609 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 2083314 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 563293 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 1575397 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2355863 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 2764883 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 4060182 7785554 ~ 7788321 (-) True G153733

Expression Profile