RNA id: TU192568


Basic Information

Item Value
RNA id TU192568
length 434
lncRNA type intronic
GC content 0.57
exon number 2
gene id G152906
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4292030 ~ 4292882 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCAGGCCGGTCAGCCTCTCACTGACCTCCCACAGCTTCTTGGCCACGGCGTCATCCCGGGCCTTGGCTCCCACCTCCTGCACGGCGCAGTTGGAGAAGTAGCGCCCGCTGAGCGGCTCAATGCTCTCCTGCAGCGCACAGTGCAGGGTGGTCTGGGCGCCGGCCTCTGCGTCCACTGCAAACAGTCTGCCAATGGGTTCGAAGGCCGCTTTGATCCAAGGATTGAAATTCCGGCCCATTTCTGTTTTCACTATTNNNNNNNNNNNACTGTAGCAGGTGACGTTGGTGCCCTGCAGCCTCTTGGCCAGCTCATGGGTGAAGAGCACATTGCAGAGCTTGCTGTGGCCGTAGGTCTTCATAATCCTGTAGAAGGAGTCTCCCAGCCCCAGGTCTTTGTGGGTGTTGATGCAGTCAAAGTCAATCTGCCCGGAAN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192522 lncRNA upstream 31395 4258866 ~ 4260635 (+) True G152866
TU192366 lncRNA upstream 530203 3723913 ~ 3761827 (+) True G152764
TU192236 lncRNA upstream 1031601 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 1091843 3199332 ~ 3200187 (+) True G152656
TU192233 lncRNA upstream 1105042 3184755 ~ 3186988 (+) True G152655
TU192606 lncRNA downstream 239439 4532321 ~ 4534824 (+) True G152943
TU192772 lncRNA downstream 897645 5190527 ~ 5190796 (+) True G153080
TU192775 lncRNA downstream 902906 5195788 ~ 5201535 (+) True G153082
TU192811 lncRNA downstream 1015063 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 1028178 5321060 ~ 5323923 (+) True G153118
AMCG00005534 mRNA upstream 11585 4264415 ~ 4280445 (+) True AMCG00005534
AMCG00005536 mRNA upstream 41182 4240208 ~ 4250848 (+) True AMCG00005536
AMCG00005535 mRNA upstream 64340 4219881 ~ 4227690 (+) True AMCG00005535
AMCG00005567 mRNA upstream 298751 3918356 ~ 3993279 (+) True AMCG00005567
AMCG00005556 mRNA upstream 402369 3886333 ~ 3889661 (+) True AMCG00005556
AMCG00005537 mRNA downstream 12743 4305625 ~ 4310148 (+) True AMCG00005537
AMCG00005544 mRNA downstream 186564 4479446 ~ 4490819 (+) True AMCG00005544
AMCG00005545 mRNA downstream 202726 4495608 ~ 4520105 (+) True AMCG00005545
AMCG00005546 mRNA downstream 267339 4560221 ~ 4563020 (+) True AMCG00005546
AMCG00005553 mRNA downstream 311994 4604876 ~ 4615951 (+) True AMCG00005553
TU192563 other upstream 7067 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1021191 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1021191 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 1442422 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 1781354 2503910 ~ 2510676 (+) True AMCG00005481
TU192612 other downstream 267331 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 921941 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 2194836 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2967795 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 3923008 8215890 ~ 8230590 (+) False G153815

Expression Profile