RNA id: TU192577


Basic Information

Item Value
RNA id TU192577
length 1089
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G152915
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4292030 ~ 4300398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCGGCTACacgtttgttttagtttgtcatttttattttttcctgatcTTCGAAACATTTGTATTCCCTTCGGTGGAAACAAGAAAACGAGGAACAGTACAggtacacattttaattcattgcGATTGTTACtgcagtaattaaaaacaaaaccagcataCCAAGTCACAGACTAACGCATGATAGCTGCGACACAAAAATAGCTACACATCACAAACTgccacaattattattttttaaacatgtattccaCAAACAACATCCATAAAGGCTAGCAGCCTGTGTATCCTTCACTCACTGCAGCCAACGAACCTCGCGAAGGCGTCTTCTTTCCTCGGAGCACATCCCAACACCAAGTTTCATCCGACACCAGCAGCAGCTTGCCCTTGCACTGGGAAGCAGTTTACGATCATTGGTTCAAACGTCCATCACAGGGACTCCAGGTTGTGTAATCGGGCAGCGATTTGAAACAGTCATGAGACCAGCAGGTACCACGTAATCTGACCCTGAACCTCAGCCCCGCAGATTACAGATCCCGGGTTCAAGCACATGGAGTCAGTTTGTGCTGCTGGTCCATTGTGTGCAGATGCATGGGTTTCATCACGGAGAGGAAACATCATCTCGCATCACACTGTGGTTTGCTGCAGAGCTCAGCAGCTACAGGTGACCTAAGCATGGTCTCTTTCCCATTGTACATTTCAAGTCGTCGGCTGTTGCACAGTTCTTCCAAATATATGCACGCATACGAGTCAAACTGAGGCATggttggcaaaaaaaaaaaaagacaactagaataaaataaaaatacacaaatgtttatccccttatacatacaaacacacacatgtgtatatatattacacacatacatatacacacacacacacacacataacaggTTCTTTGGTCAGTTTTGTTCATCTTCTTTGGTCGTTGCATCTGATCCAAACTAACACTTGAGCAGAAACCCCAACCCAGCCCTGTGGCGCTCCAGACAGCGACTGCGCCCGCTCCTCTCCACACTCAGCCCTggagcctctctctctgctcaggCCAGGCCGGTCAGTGAGAGGCTGACCGGCCTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192551 lncRNA downstream 31718 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 298509 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 422821 3859796 ~ 3869209 (-) False AMCG00005560
TU192431 lncRNA downstream 499586 3788208 ~ 3792444 (-) True G152815
TU192408 lncRNA downstream 566658 3698811 ~ 3725372 (-) True G152793
TU192605 lncRNA upstream 231042 4531440 ~ 4531732 (-) True G152942
TU192843 lncRNA upstream 1050955 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 1052955 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 1186911 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 1347960 5648358 ~ 5648709 (-) True G153236
AMCG00005568 mRNA downstream 272284 4004263 ~ 4019746 (-) True AMCG00005568
AMCG00005560 mRNA downstream 423574 3850136 ~ 3868456 (-) True AMCG00005560
AMCG00005561 mRNA downstream 470688 3807765 ~ 3821342 (-) True AMCG00005561
AMCG00005552 mRNA downstream 599923 3652635 ~ 3692107 (-) True AMCG00005552
AMCG00005525 mRNA downstream 659318 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005547 mRNA upstream 233742 4534140 ~ 4536045 (-) True AMCG00005547
AMCG00005549 mRNA upstream 242928 4543326 ~ 4544200 (-) True AMCG00005549
AMCG00005548 mRNA upstream 246679 4547077 ~ 4551659 (-) True AMCG00005548
AMCG00005555 mRNA upstream 260535 4560933 ~ 4596482 (-) True AMCG00005555
AMCG00005541 mRNA upstream 378252 4678650 ~ 4696115 (-) True AMCG00005541
TU192573 other downstream 2138 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 1201316 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 1416021 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 1962346 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 2570828 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 1000371 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 1780837 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 2189857 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 3485156 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 3698938 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile