RNA id: TU192831


Basic Information

Item Value
RNA id TU192831
length 616
RNA type TUCP
GC content 0.41
exon number 4
gene id G153130
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5300769 ~ 5302198 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGGAGTGACACTTCGAAAGTCAACACTTctccatttaaacaaaacaaaacaaaacaaaatcgcaacaatatatatttcctcACTTCTTTCCAAACAGCAGTGCCCACTTTAAACTTTAGGTGAAGGGCTAAGTAGGTAATGGAGCTCTTTTTGTGACTCTCTGGGCTTCTCTCATACATCTTGGAGCAAACTGATGTCTCTGGCACGCAAATACTTCTGGCTATGGGTGATTGTGGGAATGATCTTCGTCTTATTCTTCTTTGGCCTCATCTTCTTCATCATCTACAAGTGCTTCACTAGGAAAGATAAAACTCATTATACGCCGAATTCTCAAGATACACCAGGTTATGAGTTTTATTCCCGGGGCAGCCAGTATCACCCCAAACACCTGGAAGAGGAGCTGACCCCGTTACCCCCGTTACCCCCGAGGGACATAAACTTCCCAAAGCGGCCAAGTGAGTTCGACACTTTCATCAACCCCCCAGTGAAAATTGGTAAATCTGCATGctcatgttattttcattatgattattattattagatttacTCTAGTACAGTAAAATCAAcagcatatacactcacctaaaggattattaggaacacctgttcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 769037 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1000371 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1040457 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 1307248 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1431560 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 49155 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 51155 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 185111 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 346160 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 439294 5741492 ~ 5748572 (-) True G153248
AMCG00005619 mRNA downstream 4216 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005586 mRNA downstream 32091 5249374 ~ 5268678 (-) True AMCG00005586
AMCG00005587 mRNA downstream 56447 5241801 ~ 5244322 (-) True AMCG00005587
AMCG00005588 mRNA downstream 94188 5195219 ~ 5206581 (-) True AMCG00005588
AMCG00005572 mRNA downstream 129154 5170773 ~ 5171615 (-) True AMCG00005572
AMCG00005618 mRNA upstream 4390 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005617 mRNA upstream 8461 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005620 mRNA upstream 15700 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005616 mRNA upstream 42311 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005574 mRNA upstream 70263 5372461 ~ 5405899 (-) True AMCG00005574
TU192573 other downstream 1010877 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2210055 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2424760 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2971085 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 3579567 1708683 ~ 1721202 (-) True AMCG00005461
TU193087 other upstream 779037 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1188057 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2483356 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2697138 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2789550 8091748 ~ 8124685 (-) True G153806

Expression Profile