RNA id: TU192894


Basic Information

Item Value
RNA id TU192894
length 1729
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G153178
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5487309 ~ 5489599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attggaaaaaaattatattttggaagaacTCACTACAGAAGGTGACAATTTCCAttacatgaaaaatatacatcagtATTTTGTCTTTGTACATTAGGCAAGAAAACTGCAGTAGTCCAGAgccagaataaaataaatgaaagaaaacaaagggaaaagggaaaaaaaaaaaaaaaaaagacgcgCACgcatacacactctcacactcacatcAGCATCTTCAATACCAAACCCAGAAACTGCCCACATGAACACCTACAGTTAACGCATGCATAATAATCCTATCTAGGACACCACAAAAACAagcttgtaaaaataatttgcttaattagcTGGATATGGGGCAAGTCGGGCACAGGACGGCCCGATTCTCACCTTGacgtttaaaattaaaatcggTGCACCACagagagaagaacaaaaaacaattattgctacactaaacttttttttaattttttctttgttttaatcgTCCAGGCCTAAAcaaagggtttaaaaaaaaaaatccaaaacaaacacatggaaGGGTGCATGGCAAAGTCTCATTGGGTTTCTTGCACATCCGCTTTAGTTCAATGCAGGGTGTATTACCAAGCAATTCAACAGGAGGCACTTCTGAAAAAACGAAATTCAACTACAAACAGGAGaaatcaaaaggaaaagaagCTCTTCTCGCGCATGCAGCACCTCTGATCTGAATCCACAAGTGCACCTCCGATCTCTGCCGGTACTTACAAGGCCGACTCGGCACAATCACACCGGAAAACCCTTTGCCAAAGCATGAGCACCtcgtgtttaaaacaaaatggagttaaaatggtttaattttataGAAGTTCCACGGAAGGGGCAGAGAGCAAGAAAGGATCAAACATGGCAAACGCATGCTTAAAGCTTTTTTTGTCCCCTCAAGGCGATTAAAGCTCCAAActgatgcattgttttaattccaCTGTCATTTTAGAACTTGCCAATTAGAGGTTCTTTCAATGAATTTCTACCTGGTTTTAATTATTCCTTTTACAAGGCTTGCTTTTAAAGTAACCTGTAACAGAAGTAATGCACATAAGAGAAGGGTAGTGGGAGGACTAAAATCTTCAAGAATTTACAGGATTCATATTCTAACTACATAAGCGCTATTTATTTGGTACTATATGTGTCGCTGGGTGAATATGAACAGTTTATATATTATCCGGTTCATGTTTGTGCTATGTACAGGTCTTTACAATTCTTCCTGAAGGTTGAAGCAGTCCGTTAGACTTCAAAAAAATTGCGTGATCATCTTTTTAGGTTGGCACTTGGCGAGGCTTTCGTCAGCGTCGGCGACTGGCTTTTGCGTTCGATTGCAGCCGGTTTGGCCAGTCTGTGTTCTGCCAGCTTTCAATAAGGACAAGTCTGGCGATAGTTGGGTAGAGTGCAGGAGAACAGTGCCATGTTGTTTCTCAATTGGAGACCTGAAAAAATGTGAAGCTACAAGCTGCTGGATTAACATCACTCAAAGGCAGTCTCTTGGCTCTTTCTTACACAGCGAGCaactttccttttgaattctCCATTTCGGTCTTCCCTCCATTCTTTCTGTAAGAACATAAAGTGACTATTTTAAACTACTACATTTGATGCATTTATTCAAGTAGCAGAATTACAACATTCTCTAAAGCAACTGCATACGTCAAACTATTTGGGTTCACTATTATATACAGTTTTCTGCCAtcttatgtaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192845 lncRNA downstream 131612 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 134964 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 955577 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1186911 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1226997 4257221 ~ 4260312 (-) True G152894
TU192961 lncRNA upstream 158759 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 251893 5741492 ~ 5748572 (-) True G153248
TU193002 lncRNA upstream 311049 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 558531 6048130 ~ 6048470 (-) True G153313
TU193069 lncRNA upstream 579188 6068787 ~ 6069014 (-) True G153324
AMCG00005575 mRNA downstream 19473 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005576 mRNA downstream 42699 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005574 mRNA downstream 81410 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005616 mRNA downstream 139041 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005620 mRNA downstream 149781 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005625 mRNA upstream 18653 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005606 mRNA upstream 177261 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005605 mRNA upstream 259177 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005610 mRNA upstream 430601 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005611 mRNA upstream 447216 5936815 ~ 5947317 (-) True AMCG00005611
TU192831 other downstream 185111 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1197417 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2396595 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2611300 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3157625 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 591636 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1000656 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2295955 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2509737 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2602149 8091748 ~ 8124685 (-) True G153806

Expression Profile