RNA id: TU192977


Basic Information

Item Value
RNA id TU192977
length 3881
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G153248
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5741492 ~ 5748572 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCCCTTTTAAACtcaattttattattgtatctgCAGTCTTTACAAGAACAAATGTGCTAATTTTACATCAAGATTAATGTAAAAAGAGGAGGCAATAATTTAAGAGCTATAACAGATGAAAGTGGACTAGTCTTGAGCAATTATATTACAAGTCACTTTATTACACTAGGGAGcacctgactttttttttttccctccctaaCCGCTCAAACGTGTAATGAAATCTGAACCATGACTTCCAGAGGGACTGCACGCTAAAGCAACTTTGACTAAATATCCGAGACACAGGGCAAAGGGCTGTTTTTTCTATATCCccatttgacttattttttctAACGGGTATAAATGTATAGAAGTAGCCAAGCTGGAGCAATATGGACACTACACTCccacaaatacaaaagtaaagaAACATTACTATTGACTCATGGACCCCTTCCTGCCTAGATTCCATGTCCAGAAGAACATCCCACTGTATGAGTAACACACGAGTGGCTGTGCATTTTATACGGCATTTGCAATAACACTGAAGTAAAAACTCCAGTCCTGAAAGTGTGCAAGGGTATCTGACAATTCTACCAACATTTTaacaggggtggggggggtgtatttatttatttgacaggcCCTGATGGTACAAAGGTGCCTAGAAAGCCTGCACGATTGATGGCCGCCGAGTTTCTGACATGGAGTCTAGGCAGGTGCGTTGGTTTGTGTTTCTCCTGCGTCCGTGTTTACTGGCACTTGACGAAGCCGCTGAGATCCTCCAGGAATTTGATGTACTCCTGGTGCTCTAGGGCGGTGCTCAGCTCCACCAGCTCGTCGGCGAAGGTGaaacacaaacctAACGCATAATAAAGTGTAGAATCAGATGGTGTGGaaatagtatttattataaatgctATATTTTACAAACTCTTACATCATTCACTACTGTTTTTTCAAACCACATAACACTTTTATATACCCATAAAGTCCCCCCTGGTCTCATAGGCTTCTAGTTTGTGCTggctgtggtttattttatacaaaatatacagaacCTGCCTTTCCAATTACAAAGTCATTTCACATCACACTTTCAAAACACCCTGTGTACATTGTTCAGGACAGCTAGCCCCATTTTAtaaccacagaaaaacaaataaaacaggatGGGTCCAAACAATATTTACTATAACTGCAACTTTAAACTGCTGTCAAATTAGATTATTAGATTTGTTAAATTACAAGATACACAGGCCAACTAAGTGTattcctgttgtttttattgtaaaaaaaataatagagatataattttaatacatttgaattccCTAGAGTAAATCCATTCTGCTCTTTTCTACTTAATCAGCTGAACGTGTATCAAGGTGGATgctgaaaaaacataaaaccaatgcgTAACTGCAGGGATATTAAACTCACTTgcagtcatttttcttttaatttcattgtaCGAAGAACACAAAGGATGGTTTGTTAAAGTCTTAACTATTTACATTggcttttaatgatttaaaaaatgtactccAATGACCTTGTGGccttgtaaacattttacaaacattcTAAGTCACGTTGTAAACAGATTGTGTTATCCCTGCTTCTTCAACTATATTTTCACTATTActtatatcattttaataataaaataagtaatccaaaataataataataatagaaggtTTGAGTCCTGAGATTTATTACTGGACCTGCTTTGCTGTAAGAGATATGAATCCTTACTTTTACAATGAAAGGTTTAGGATCTGAAAACGTAAAATGTGACGTGAAGTTTACGGAACGTACTGCCACTGATTGAGAAGAGAGTAAACGTATCTGATTAGTATGATAGCTGAGAAACTAGGCTTTTGTACAATTTTGTCTACTGACTCCTAACTTAAACATGAAACTTGAGAAGGGGAAAAAGCTTTCGTAGAAGTAAATTAGGAAACCTAAATAATCCCAATCAACACCGCCTAACAAGGCTTAAATCAGTGTTTACCACCGACAATGTACACCTTGTAACACAACATACCAGTTCTCCAATTCAGATACAGTGTAGTGAAAAACCTGAGgaattgtgtaatttattttcactgtaactCCATGCAGTGCATACCTCTCTAATACTACTTTACATGGTTAAGCTAGTATTGTTTAACAGTGCCTGACAGATACAAAAGGTAAATTAATACCAGAGATGTCCCTAGTCTATTTAAGGACCAGTGTGATGTCATTGTGGTCCAGCACCACGTGTGAATTCTGGTCAGTGTGAAACTAGTGAAGTTTAGCCACATAAAGTGCAAGATGACATGCAGTTAAAGATTTAAAGACTTTATCGTTTGCAGTTGAGTGTTAATTGTGGAACACAAAACAGGGTGAAGTAGTCCTATAGCTCTCTCAATGTGGAATTGCCCCCAAAACCTGCTTCGGTCTACCACAATGACTGAACACAACAAATGCCTCAAGACAGCAGATGCTAGTTGGTTCTAGGTTAATTAGTCTTCTAGTGGCTAATCTTTCATGGAGTCCCAATTCTATTGTATCTTGTGGTATAGGGCTAGGATGAGGGCAAAATGGCCAACCTGGCCATTTCTGACTGACAACAAAGCCACCGAGAGCCATGGCTAAAGTCTTCCATTTGGAAAGGAAGCTGTGTCAGGGTTTGTGACTCTTGCAATATATCAGGGAAGAAATGCATGCACACAGGCTTGCTTTTATTCAACAGTcgaatatttgttttcttagacATAGAGGATCGAGTGTTGATATACTTGAGTTTGTCAAATATAGAGCAGTGGAAAAACTCCATTAAGAAACTTTTGAACTGAAAGCTACAGTAGCCAAACTGTAAGCTGAAATCAGACTCACAAGCCACATCCTGTTTAGGGTGAAAGCTCTGCCTCTCAGTCGCTTGGTGTGTCAAACAtcatctgtatttctttttgtttgtcacAGAGACTTTCAGATGGGACTTTACTGAATCCACATAAGAGCCATCCCTTCCCCATCTCTGACAGCAGAATTCaaccatttttttcttcataagaTATTCAATATGATTGGTGGTCACCTGCTGCCGATTTCCCcctgagagatagagagatctGAGATGCCACAAAAGGCTCAGTGaagcagaggtcagaggtcacccATACAGACGGATGACCTTCGTTGAGACACAGTTACACAGAGTTAAGGGCCACATATTTTTCAGCCTGGAATAAGCTTCACAATAGTCAGCTTTACTGCCACACATTGGACGCCTCCAGGTTCGAGCTCTTTAGCTTCCCGTCTGAGACTCAACCTATGGTTCCCGATCCGAACGCCACACAGACAGAATTCCCGAGCATCTCCAACTTCCAGTATCCATCCTCAGTGTCAGGTGCTTTGTTTGTCCTGCAATTCTGGTCACTGgtaagtaaaagaaaaaacaagggGTGGACAAAAAGGTGAGGCTCTCATGTGGTGCGCACGGGGGGAAAACTACAGGAGGCCGTGACTCTTTGCAGACGTGTCTTCTGTGCTATTTTTGGCGAAACGCGCAGAGAGAAGCTCGAGACGACCGTGGTTAGCTCTTGACAGCCCGCAGTTTCCGGCGGAAGTACTCGGGGGCGGCCTCGTGCAGCCACTCGGGGTCCACCAGGCACAGGTCTCGCATGTAGCACTTGGAGGTGTGCAGGAGCTCATTGAAGACCACGTAGGCCGGCTTGGCCTGGAAGAGCACCGAGGAGGGGTGGATGGCCACCGGCTGGTGGGTGTCCAGGGCCGTGTAGCTGCCGTCGGGCTGCAGCTCGGCCGCGTTGGTGAAGAGCCCGTGGGCCAGGCATCGACGGATATTGCCCGTTTCGGTGCGGGAGGACTCCATGGACATCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192961 lncRNA downstream 92783 5648358 ~ 5648709 (-) True G153236
TU192894 lncRNA downstream 251893 5487309 ~ 5489599 (-) True G153178
TU192845 lncRNA downstream 385795 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 389147 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 1209760 4531440 ~ 4531732 (-) True G152942
TU193002 lncRNA upstream 52076 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 299558 6048130 ~ 6048470 (-) True G153313
TU193069 lncRNA upstream 320215 6068787 ~ 6069014 (-) True G153324
TU193123 lncRNA upstream 483594 6232166 ~ 6234028 (-) True AMCG00005628
TU193124 lncRNA upstream 485556 6234128 ~ 6234359 (-) True G153373
AMCG00005606 mRNA downstream 32037 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005625 mRNA downstream 228098 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005575 mRNA downstream 273656 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005576 mRNA downstream 296882 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005574 mRNA downstream 335593 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005605 mRNA upstream 204 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005610 mRNA upstream 171628 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005611 mRNA upstream 188243 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005601 mRNA upstream 321620 6070192 ~ 6072666 (-) True AMCG00005601
AMCG00005598 mRNA upstream 410153 6158725 ~ 6170298 (-) True AMCG00005598
TU192831 other downstream 439294 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1451600 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2650778 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2865483 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3411808 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 332663 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 741683 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2036982 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2250764 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2343176 8091748 ~ 8124685 (-) True G153806

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU420863 True 397 lncRNA 0.47 2 NC_048569.1 14176471 ~ 14177082 (-)
mexican tetra (Astyanax mexicanus) TU420863 True 4476 lncRNA 0.37 3 NW_019172844.1 1541903 ~ 1546429 (+)