RNA id: TU193523


Basic Information

Item Value
RNA id TU193523
length 1237
RNA type TUCP
GC content 0.53
exon number 4
gene id G153675
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7260677 ~ 7265971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCAGCGACAACAGCCTTGCCGGTCTCTGCTCGTCACCGAAAAGCACCTTAAGACTAACATGCTCTCAAATGCACTGCACCGACACCATGAGTGTGGTTTCCAGGACACCGAGGGAGAGAAATAAGCAGTTTTTGTACCTGTCCCTTCCTGTTGACACCGATGATGCCGGCAGTGGCTTCATGTGGGGCCGTGACGAAGATGGTCTCTCCGCTGATGCGGTTCATATAGATGCAGATTTCTACCGGTGGCCTGCTGTACCTGCATCGCAACCGGAAAGTCGTTCTGAGCCTCCGGGGGGAAGAACACGTCCACGGCTTTCTTTGGAAATGGTTGATTCCCCGTTGGCGGTGTGCCCACTTCGATGATGTGCAACTGGGGGGTGAGAAAGCAAAAAGGAATAAGTGGTAAATAATGAAAGATTTCCAATATGTATTCGGGACTGCTCTAAGCTGTAGCACACTTCAGACATGAGAAACTAagctgtatttttgtaaattttcCTCACGATCTAACTAACCGAAGACAGGCGATGACCAGCTAGCTTCTCACAGACGGGCTTTTTCGTTCAGGCTCGCAATCCTACCTTTCCTCCTGCTTGACCTCTGACAGCGAAGCAAAAGAGCGTGGACTCCTCGGTGTTTCCCTCCATTTTGAACTGAGCGAAGCCCGCCGCGTGCCCCTCGATGGGTTGGGACACCTTCCTGTCCACAGAGTACAGTTGCATCGCACCCACAACACGGTTTCCTGTGCGGAAATGCCAATGAGGAGAAGCCACTTCTGCTTGGCATCCGTGCGGTAGTTGATGATCTGGCAGCCGGCAAGGCTGGAGTGCCGATCGAAGACTTTGATGGGCTGGGAGTCTCCCTCCATGCTCCAATGGTAGACAGCGTTGTCCGTCACGAGGGCCACGGTGTTGAGGGAGATCCACTTCCAGAAAGTGACATCATCAGTCATGGTGTGGGCCTTCATCTTGCTCTTCATCTCAATGTTAAAAATCTGAAGAGTTTTCGCAGCACCTTTCAGCGCGATGACTTTGCTGGCCGGGTTCATGATGGCACTGTCGGCGGAGATGGGCCGGCGGATGGGGTTGTTGGGGTCGTTCATGTCAATGATGACAACCTGGGCCTGCTCCCCCACCTTCTCCCGGATGCAGATGAACTTGTCCGACTCCATGGTGAGGGTGCTGAAGCCGATGTTGGCCGGGTTGATACCCAGGTTTTGGAGCTGGAGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193461 lncRNA upstream 102802 7102205 ~ 7157875 (+) True G153626
TU193312 lncRNA upstream 598197 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA upstream 598197 6608643 ~ 6662480 (+) False AMCG00005663
TU193304 lncRNA upstream 598197 6614451 ~ 6662480 (+) False AMCG00005663
TU193268 lncRNA upstream 697199 6560899 ~ 6563478 (+) True G153485
TU193551 lncRNA downstream 31163 7297134 ~ 7297381 (+) True G153687
TU193553 lncRNA downstream 32183 7298154 ~ 7298512 (+) True G153689
TU193564 lncRNA downstream 54644 7320615 ~ 7321251 (+) False AMCG00005694
TU193569 lncRNA downstream 94413 7360384 ~ 7361317 (+) True G153702
TU193575 lncRNA downstream 483212 7749183 ~ 7773661 (+) False AMCG00005660
AMCG00005686 mRNA upstream 18891 7241280 ~ 7241786 (+) True AMCG00005686
AMCG00005682 mRNA upstream 86372 7170525 ~ 7174305 (+) True AMCG00005682
AMCG00005681 mRNA upstream 108717 7146999 ~ 7151960 (+) True AMCG00005681
AMCG00005630 mRNA upstream 323843 6933254 ~ 6936834 (+) True AMCG00005630
AMCG00005643 mRNA upstream 474818 6784162 ~ 6785859 (+) True AMCG00005643
AMCG00005693 mRNA downstream 33704 7299675 ~ 7304137 (+) True AMCG00005693
AMCG00005694 mRNA downstream 41087 7307058 ~ 7334571 (+) True AMCG00005694
AMCG00005696 mRNA downstream 77037 7343008 ~ 7343639 (+) True AMCG00005696
AMCG00005697 mRNA downstream 78017 7343988 ~ 7346979 (+) True AMCG00005697
AMCG00005695 mRNA downstream 85223 7351194 ~ 7355784 (+) True AMCG00005695
TU193227 other upstream 772057 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2038762 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 2699193 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2975714 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 3989838 3266742 ~ 3270839 (+) False AMCG00005498
TU193739 other downstream 949919 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1238224 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2169929 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 2321831 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 2615411 9881382 ~ 9883955 (+) True G154330

Expression Profile