RNA id: TU193533


Basic Information

Item Value
RNA id TU193533
length 3722
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G153678
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7179628 ~ 7202286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTAGCTGCCTTAATTCCTGAATACTCTTTCACAATGGTATTTGACCTGgaatacaggtgtgtgtgtgtgtgtgcagacaaTGTGCCTTTTGTCGAATGACGCACTTTAGTTTAGTGAAAGTAGATTTCGGTGAGCATGTTGCGCAATGTCAAACCTATCCCTTTTTGGAAGTCTTTAAGTACCTTTTTTTCATCTGGGAGAAATAAGCAGGGTAGGAATCTTAAGTTTACCAAACAAAATGCTTATACCTGTGGCTACGTCTCGTTCCTAATGGCATTGAGCTATAGTGATAGGACACAATAAAGGTTCCTCTTTTCCACAGCCAGAAACTGTTTGTTATAATAACGTTCAGCAAGCACATCGTGGAGCAGATGGTGTCTCTAATCGGTGCCATCCCGGCTGTGGGTCCTTCCCTTCAGAAGCCCTTCAGCGAATACCTGGAGAATCAGCGAGCAAAACTGCACCACAAAGCCGGCGAAGGGACCCCAGCGGGGGAGAACTGGCTGTCTTGGGTGTTTGAGAAGGTGGTGATTATCATGGTGTGCTATTTTGTCTGTTCTATCATTAACTCGATGGCACAGAGCTATGCCAAGCGAGTCCAGCAAGAGAAATACTCTGAGGAGAAAACCAAGTGATACTAACTCTCACAATCCTCTAACTGGTACAGGGCGCTTGTTCAGAACAGTTCATGTAATGGTTAAAACAGACAGACCtgcttttcttccatttttttaaatactactactatttatttttccccccccgATAAGCTGATATGATAAAACTGGCACTAAACAAATGTTTGGGCATATTTCGAtacttgattattattattattatttttgtttgtcgGTTTAGTTTTTGTTCTCAGTAACAATACAAGGTAGCGATTTGTAGATTTCTGGACGTAAACGATTAATGCTAAATGTCTAAAACTGTGCCCGTTTCTTGGCTTGTCACAGTGGTATTCTGTGGGGTGTGCGATATTAAACCATTCAGTGTAACTTTTGACATGAATACCATTTCAAGCACTCAGTTTATCAGCGCAGCACTGGGCTCTCGATgctgcctctgtctctgtagTTGCAAAGGCCTCGTGCAACATTGTTGGTCCTGCTTCCATTGAAGTGAAGTAAACTCTTACAGGTTAGacttgatttatttaacttaattatgTGTAATTGTATGGTTGACTTTTGCTGATAtgatactttttctttttataatgtGACATCAAGGTCTTACTACCacaatgcttttctttgttttattttttggggaagCCTATTTATGAGCAGTATCTCGTAcgtttttcagattttttttgtagggGGTTTCTTCGTTTTACTTTTTTCACTGTTCTACTAGTAtagcaatataaataaagatggaTAGACATGGTATTTAAGCCAGTTGCACAccctgtacattttttttttttttttaccgtgCTCAGCGTTATTTTTAATGCTCagtaaagagaaataaaaatcataactgTTTCATTTGTAACTGTATATACTGCGATTAATgccatttttaattctgtacatttaGACTGAACTTTTTGATCAGAATTTATAAAACCCACCCTGAATCATTCTACAGCTTTGTCTGACTTTATTCTCATTTGTGTTGGATTTTTTCCCTCTGGACAAGTTTACTGGATATGTCTGGAATCTTTAAAAGAGATGCTTGTTGAAATAAAAGTTGATTTCATTTCgattttttacttttcatgcTCGTATTTGGCAGTTTAGACAACAACACATCTTGCTGTTGACTCTCGACGTTGGTAGCTTCTGCGTCAAAGACTAAACGCGAGAATTGAGATCCTTCGTGAGGATAGAGCTGTGACTTGTTCTCAGCCAATGAACAGTAACCACAAACACGCTGTTTCATGCGCTGTGTTGGGGGATAGATTTGTGCAGATTTGTGTGTCAGTTGGAGGGGAAACGTACAGGGTAGCTATAAATGtactttcatttaattacagcTTGCAAACTGTAACACGTTTGTCCgaggacttgtgtgtgtgtattcacatgGGGTCTTGCTCAATCCACTGGCACACTTTCCAGCTTAATAAATCTATTTAACGTCCCCTCTTAACGTGTTTTCCCTCGTCTGTGTTCTTCCAGAGCAGGCAGGTGTGTCGGTTTGAGGATTGGGTTTTGTGAAGCATGAGGATGTTCTGTAGCAGCGAATGAAGTGGCAGCCAGGGGGGTAAAGTCCTCGGTGCATGCACACTTAATTGTGTTAACTTATCAGTTACAGTTTAGCCAGTCACGGAGGGGGAAGTCGTAAGAAACGGAAACAAGTGAGGTAACTTCAGTTTGTACAGTAAGGGGTCACTGCCCTGTAGACACCTGACAGACATTGCGCAGTATTGTTTCTGGTTGGGGTTGTGggcggagggagggagggtcaAGGGAGATTGACTTctagatcacacacacacacacacacacacacacacacacacacacttgtgagCCATGCACAGTCTCACACTGAACGAAGATGCCCTCTTGAGCCACTTGTCGGGAGACGTCCATCTCTGTGCCAGCGCTGGGCAGGTGAGTCCAGGCGaggtgtctgtctctctgtgcggTCGGTGTCCTCCTGCGTGTCCCTCAGGCATGTCCATCACTCTACCATCCTGTCAGATAGCTTATCAGACTGGTGTTGGCTGTTAGATCGCATGGCAACAACAGTCTGTAGGCTGTCTGACACTTTGGGGTCTTTCATCAGACCAGCATCCTGTTGTATCACCTCAGTTCCCATTGTAATGTGTAAGTTGTGGTGCGTTGTGTGGGTCTCTGTGTCGTGCTCGCCTCTCGACGTTGATGTCCAGTAGTGTTCAGTTTGATGGCAGTAATTCcagttacaaaaataacaacgcTTATTTTCCTGCTGTGCGTTTCCTTATATGCAcagacattaaaatacatatatataatctgcGTGCGTGTGAGCCTAGGATCTTGCAGCCTGGCCTCCGTTGAAGATGAGAGCTTTCGCAGTATCACAAGACATCTTGTTCTGTAGCTCTCCTCTGTCCGGTCACGTCGACAGCGATATGCAAATCTGCCGCAGGGGTTTGGCTCAGCTCGAGTTGAATTTCCTGAGAATCAAGAAGGACACTGAATTGCAACATCCCTATTGTGACACACTGTGCGCGCTGGAGTATTTTTCAGTGAATCTGCCGTTGTCTTCCCTATTATGTGTGCGCTCTGCTAGTTTCAGTCTGTTGCCCAATTCCTTTTTCTGATGAAACCTCTTTTTTTTTGCCACTGTTAGTGAAGTTTGTTTTACTCAGGAGTTTCCACTTGTAATCTGTATCAAGTGACTCTTGGAAACCCTGCCTCTGCTTTCAGACATCTTAAACCTGCCTGGTATGAGGTGACATGCCTTCAGAGAGTATTTTACTGTGTGTGGATGGAATGCAAtaatatgaaacacattttttttttctttctcctatAAAACTCGGGGGGGGAAATTCAGGAACTATTTGCCTGCCCTGAACTGAAATGCTCCTTTAGGTATTTTTGGAGGTGTCCTATTTGACACGGAAATTCCATTGCAAACTGTGTACAtatgcgtgtgtctgtgtgtgtgtgtgtgtgtatgtgtatctgtgtaatttgtaatgtttgatgtttCATGTTGTTGTCTTATTCCCTCTTAAATAAATGcctacataaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193483 lncRNA downstream 39834 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 126069 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 243952 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 517132 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 616058 6560939 ~ 6563570 (-) True G153487
TU193539 lncRNA upstream 76218 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 672501 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 779744 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 781954 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 1371906 8574192 ~ 8588222 (-) True G153980
AMCG00005683 mRNA downstream 10239 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005685 mRNA downstream 33821 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005684 mRNA downstream 71854 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005679 mRNA downstream 102324 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005680 mRNA downstream 131146 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005689 mRNA upstream 13067 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005687 mRNA upstream 27620 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005688 mRNA upstream 41664 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005659 mRNA upstream 79334 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005698 mRNA upstream 265405 7467691 ~ 7468500 (-) True AMCG00005698
TU193235 other downstream 683057 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1096762 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1877430 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2889736 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4088914 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 583268 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 797050 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 889462 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1888136 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2223004 9425290 ~ 9434940 (-) True G154250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005237 False 148 miRNA 0.43 1 NC_007121.7 28198894 ~ 28199041 (-)