RNA id: TU193605


Basic Information

Item Value
RNA id TU193605
length 2745
RNA type TUCP
GC content 0.51
exon number 2
gene id G153733
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7785554 ~ 7788321 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTAgttcacattttttaataacatggCACAATTTACAtaacacaagttttttttttttaatgaggaaCATGCTGAAGATTCAGAGAGTCGCttcactgcttttttttctttacatttgacCTAGAAAggacttcattttttttatttttttattttttaaacgtaCATGATAAACAGCAAAAAAGTTCTGTTAATAACAATCTCTTTGCAATACTCATTAACTACCACTACGGTTCcagtgtacattttattttttgtttgttaaaaaaacactgcacaacaTCTGGAGTTCACATAGTTTGAAGCGCACAACTAAACCTTCAGTTGACTACTAAAATAGATCTCTGCTCATTAGAAACAAAACTGTCCATCGTTAGCTTTTTTCTTTCGTTTTTTCTGTAGATACAACAACTTAGGATAGCACTTTGATACACTGTTAGACCAACGgaactaattttattttcatacacatAGTTTACACTCCTTTAGAAGAAATGTTTCCTGTTGtcttttgctttttcaaagTCATATTCTCTACAAACAGAAAGGGCCAAAGCAATCTTAATTGGGGGAAATAATGGGGCAAACTTCCTGGAAAAGATCCTAACTTTTCCTACAGAGAGGTGACTTTGGGATTgggatttttgtgttttaaattgattaattttcaaaaaaaaaaaaaaaaaaaggattgtcACCAGCAAATCTATCATTTTCCATATAGGTCTCTATCACCTTGCTAACTTTAGTTTTAGATTATCTGAGAGGAAACAATACATtaagatgataaaaaaaacagataaaccTTGACGTCTTTCTGAATCTGGAGAGAATATGGCTCTGTTGAGTAAGTTTGGGTATTGGAAAGGCTCCTTTGAGAAATGCCGGCTCTTGCGGTAAAAGCCAAAACATTCATTGCATAGTTGGAGGGGTGATCTGTGAAACGACACTTACCTTGCACAGCGCGAAGCAGGCTGTGAGAACAAATCATAAAATCTGCAAATAGCACAAAGTAAGAAGTTCTGGACTCCCGTTAGTTCACTCCTCTATGTACATTTGTACAAAGTAAAGCTTGTACCTTTTAAACCCCAGACACAGGCCTGTCTCTGTACACTGATATCTACAAGAgcctgcctcctcctcctgcaaCGAGTACCTGTACATCCCGAACAACCGTCTTTCCCAGGGTGTCTATTTGCCGTTTTGTTCCACTAACCTCCCGCATTCCCAAGAACAAaccttttttagtttttctgtacAAATAAAAGGATACACAcgaaaacagaaaagcaagttGGCTAAAACATATGtaaatttttttctttttgagtttttccctctccttttttttgttgtcttttttgtcttttttttttttttttttacaaaaacccATAATGCAATGTTCCTTTTTTGCACATATTGTATAGACAGCTATGATACACACGCGTCGCCCGATCCTAAGTGCTCGGTAAAGTCCCCTGACGCTCGGGCACTCGGTACGCTCTGTCTGCTCACCGCGCCTCGATGTCTTTGTGAGTGTGCGACGGTGGCCTGTCCCTAATGTCTGCGGTCAAAGGCGTCCTTCGTGGAGAATTGGGGCGAGCCCCCAGCGTGGGGATCAGGGGGGGGGGTGCGCTCAGGGAGGCCGTGGGTGGGTTCTTGTTGAGGATGCCATTCTGGTGCACCGACGAGGGGCTGACCCTGGGGtagtgcatgctgggaaggcCCGGGGTCATGAGGCCGGGGTGGTGCAGGTGGCCGTCCAGGGAGGGGTGCATGGGGTGCAGCCGGGCGTGTTCGTACTCCTCCCGCAGCATGTGCAGCCGCTCGCGCTCCTCCAGGTGACTCGCCCGCTCCTGCTCCCGCCGCTGCTCCACTGCCAGCGCGTGCCCGTGCTCCCGGTTGTAGTCGTGGGGCTCCCGGTCCCTGTAGGAGCGCTCAGCCTCGTAGAGCCGGGGCCCGGCGAGACGGTGTAGGGGGTCGCTCCTCAGCAGGAAGTCTCTGGCCAGGGGGTCCCGTCGATGCAGGTCCAGGCCCCGGTAGGGGTCCCTGAGCGGGTCCCTCATGGGGTCCCAATGGAAGGCGGGGTAGGGGAAGCGCTCAGCGCCGGGGATGGGGCTGATGCCCATGAAGGGCGCCACCACGCGAGTCCGCTCCAGCCCGCTGATGCTGTTCATGGGGTGGACCCCCGCCATGCCCATGTGCATCGGCATGGAGGCCATGGAGGAGGGTGGGTGCACGCTGGGGGCTGGTGGCATCTGGGGGTGCTCGGGGGGCCGGTGTACCGGTGGGGGGACCTCAACGGGCGCCTCCTGCTCCTCCTTGCGCTCCTCCTTCACCTTCACCTCGGCGCTCTTCTTCGGCAGCTCGTACACCGCCTCGCTCTTCTTCTCCGCCTCACGGCTCAGACTGCCGTTGGACCGGGACACGTCCAGCCCCGGCGGCCGCACGTACGGAGACATCACCCGGCTCACCTGCTTACCATCGTCTGCCGTGCGGCTCTCGTGGATAGTGGGCGGCTCCTTCTCCACCACATGGCTCTCCTTCAGCTTGTGCTCATCGGGCGCGGGGTCCTTCCAGGAGTCCGGGTGGTCCCGCTCCCTCTCCTTCGGCTTGTCCTTCTCACGGAGGTCGTTGGTCACGTGCCCTCGGGGGGGCTCGGTGGGGGGGCGGCTGTGACCCAGGGAGTTGATGGGTGCCGGGGAGGGGTGGCTGTGGTGCCTCTTCTCCATGGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193539 lncRNA downstream 506789 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 583268 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 645760 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 731995 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 849878 6935430 ~ 6935676 (-) True G153586
TU193615 lncRNA upstream 86466 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 193709 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 195919 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 785871 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 941482 8729803 ~ 8730149 (-) True G154010
AMCG00005698 mRNA downstream 317054 7467691 ~ 7468500 (-) True AMCG00005698
AMCG00005659 mRNA downstream 493182 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005688 mRNA downstream 509074 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005687 mRNA downstream 552679 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005689 mRNA downstream 569911 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005691 mRNA upstream 32873 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005692 mRNA upstream 64345 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005718 mRNA upstream 108025 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005715 mRNA upstream 130358 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005716 mRNA upstream 165810 7954131 ~ 7966260 (-) True AMCG00005716
TU193235 other downstream 1288983 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1702688 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2483356 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3495662 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4694840 3071860 ~ 3090714 (-) False G152645
TU193670 other upstream 211015 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 303427 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1302101 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1636969 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2527059 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU488978 True 2473 lncRNA 0.46 1 CI01000304 12686128 ~ 12688600 (+)