RNA id: TU193660


Basic Information

Item Value
RNA id TU193660
length 691
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G153778
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7982030 ~ 7983931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGATTCAGAAATGCTCTTGAGTGCAACAATATTAAAACCTCATGAAACAAACTTACGAGAGTGTGCTCATACACAAGACCAGCATGACCCAAGCAGTCTGGCGTGAGGTCATCCACAGAGTTCATAGCAATACCTCCGCAGGCCAGAGTAAGTCTCTCCATATTTCTCCGCTTGGCTCTGCGAAGGGCGACAATCCCTTCTTTTGCAAGTGCGTCTAAGGAAAATGGATCGATCCCCTTCTGGTTAAGCACGACAAATCCTTTAGAATCATCAGTGCACACTTTGTTCTTCAGATCAATTATTTTCTTGACTCGCTCTTCGATGAACTTCCTCTCTGCTTTTACGAGCTTTTCCCTCTCGTTGGCACTCTTGTAGAAAAACCCAGAGTTCACttcaGTCTTCTCATATTCCAGGGACACGTTGCACGTCAGAATGAAAGCGTCTTCAACCCTCTTCTTCATATCGGGATGTCGAGCACCATGATCCAAGACCAGTCCTCTGATCAGGGTTGTGTCGCTGTCTGTCTTGTGTTTCATCTCCATGATCTCCACCATGAAGAGGTCAATAGGCTCGTTAGGCTTCTGGATCGCAAGAACAGCATCAACCACGGCCTGGAGACGTGTGGAAACACTCGTTAAAAAAGAGCGAGACTCAATTGTCAGGAATCACTCTCTAATGGCCAGAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193615 lncRNA downstream 106988 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 703265 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 779744 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 842236 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 928471 7052805 ~ 7053559 (-) True G153638
TU193663 lncRNA upstream 309 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 590261 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 745872 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 1003350 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 1111740 9095671 ~ 9103798 (-) False G154150
AMCG00005717 mRNA downstream 4250 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005716 mRNA downstream 15770 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005715 mRNA downstream 31896 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005718 mRNA downstream 80658 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005692 mRNA downstream 112810 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005702 mRNA upstream 5425 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005704 mRNA upstream 15411 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005701 mRNA upstream 39601 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005703 mRNA upstream 53097 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005734 mRNA upstream 119014 8102945 ~ 8104214 (-) True AMCG00005734
TU193605 other downstream 193709 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1485459 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1899164 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2679832 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3692138 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 15405 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 107817 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1106491 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1441359 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2331449 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile