RNA id: TU193741


Basic Information

Item Value
RNA id TU193741
length 1673
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G153816
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8251301 ~ 8278074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGAATGTGACTCCGGTGCAATCCTGTGATTATTCTCCTATCACCCCCCGGTTCTGAGAGAAGGTGTTAGTTAGTCTTttttgtgttctCTTTAATAAATCGTATTTCTCATTCACTGAGAAAGCCAACATCAATACTGTGGGTGGAACAACTTGCCCATTAACTCAGGCCATTGTTCTTCCTCATTTTACTTTACCTGACAGTATACATTTACTGTCACTGATCAATTCAAATCATGCAATGATCTATACCACAGATTCCGTGCTGGTACTTAATTGAAGTCTTAATTGCAGgaatttcttaaattattttgaatagtaggggttttaatttaagtatagaattgtataaggaacttattaaagaaccaactcttttattacaacattttaaaagtcatatctaagcagattgttacttcaattaagaaTCAGttgagtaattgagagctcggctggaacaaaaaccagcagtggggggggggctccTTTAAGGCCAGGATAGGGAACCCCTGTTCTATACCGTAGCTTCCTTCAATCAGTTTCTTACACAAGGAGGAAATAGTAAACAATTGCACGACTCCTGTTCTAGCTCCTGCAGCTCTTGCGCTGACAGCCAGCAGATTAAGGACCTTAAGGGGGGGCGGGTTAAAACGTTATAGCATTTCACATTCTTCGACTCGCTGTTTGCTACAGAAAGGACAGATTTCCTTTGGAAACCCTACTGCCTGCAGACTGATCCCTTGATAAAGAAATCCTGTGTCAAACTGTATTCACAGAATTTATCTTCTGGCCGCATCTGTGCCCAGAACTGTGTTTTCGACTTGCTGAACCGCCCCAAGTCTTGTGATGTTCTTGAACTGAACGCTCTCGCTCCTGAACACAGGCTTTTATCCAGGACCACACTGTACTGAGGCTGCACCTCAAAATTCACCGTGAAGCAGCTTCCTGTCGAAGATCCgcattaaatgaaaactttgacccacctgccaatcacaaACTCCAAAGCCAGTGTTTTACGACTTGGTTTCATTTTGATGGAGGCTAATTGCTACCAGCCAGTGGAAACCTGTCATCCAGCACCAGGCTTGCAAGTAGCGGGGGGGTTGAAGTTTTCTATTGCACTGCAGCCAAAGTCGAATTAAGTAGCAGTCTTATCATTTTCAATCGTCATGTGTCTATTTTAATGGCCTTGACATTTTTCTCCAGTCCAATACCAATGGCTTAAAACCGCTTTGCCACTGTATTTCTTTACAAAGGATCGTTACCTCTGAACATAGCTGTGCCTTTGTTTTACGCTAGCCTTGCCAACGACTTGTAGCTAGTttgttcaaaattattttatataacgATGTGTAAGCTTGTATAGATTTTATACCATTGctcagatcctgttttgattaTATTCTCTCCTGTTCTGcatatcatgttttatatttgtcatatctccattttctttcctttcatttgagggttatgatttttgttatttaatttaaatgtttaggtttttttgttgttgttgtctttgttcttgttgttgatgaagatgatgatatTTTGTTGTTACACAAGCTGTGAAAAAAATGTGCACTTTAATCCGGGAAGTGAAGCTTGAGAGTCCGAGGAGACGACTCTGTATTTCACTGTAGCTGGAATAAAACAACCGCTCC

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193728 lncRNA upstream 20711 8213904 ~ 8230590 (+) True G153815
TU193620 lncRNA upstream 363521 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 477640 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 477640 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 889984 7360384 ~ 7361317 (+) True G153702
TU193795 lncRNA downstream 67604 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 451729 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 503915 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA downstream 515753 8793827 ~ 8796424 (+) True G154030
TU194041 lncRNA downstream 575504 8853578 ~ 8853853 (+) False AMCG00005787
AMCG00005708 mRNA upstream 20711 8216790 ~ 8230590 (+) True AMCG00005708
AMCG00005709 mRNA upstream 34651 8201620 ~ 8216650 (+) True AMCG00005709
AMCG00005731 mRNA upstream 149394 8101296 ~ 8101907 (+) True AMCG00005731
AMCG00005732 mRNA upstream 151123 8099795 ~ 8100178 (+) True AMCG00005732
AMCG00005730 mRNA upstream 158833 8058166 ~ 8092468 (+) True AMCG00005730
AMCG00005705 mRNA downstream 48987 8327061 ~ 8341359 (+) True AMCG00005705
AMCG00005720 mRNA downstream 220428 8498502 ~ 8507097 (+) True AMCG00005720
AMCG00005721 mRNA downstream 229971 8508045 ~ 8523947 (+) True AMCG00005721
AMCG00005719 mRNA downstream 273031 8551105 ~ 8558820 (+) True AMCG00005719
AMCG00005736 mRNA downstream 321686 8599760 ~ 8602730 (+) True AMCG00005736
TU193739 other upstream 20711 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 985330 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1762681 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3029386 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3689817 4560213 ~ 4561484 (+) False AMCG00005546
TU193852 other downstream 226121 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1157826 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1309728 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1603308 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1787086 10065160 ~ 10076502 (+) False AMCG00005802

Expression Profile