RNA id: TU193982


Basic Information

Item Value
RNA id TU193982
length 347
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G154010
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8729803 ~ 8730149 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacattactgcccttgttctcaattctacacttttgacaatatacccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193946 lncRNA downstream 141581 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 708163 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 745872 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 854761 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1451038 7278504 ~ 7278765 (-) True G153681
TU194132 lncRNA upstream 257132 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 365522 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 365522 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 368023 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 398621 9128770 ~ 9139826 (-) True G154157
AMCG00005761 mRNA downstream 1711 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005758 mRNA downstream 38072 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005740 mRNA downstream 68624 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005741 mRNA downstream 88113 8637800 ~ 8641690 (-) True AMCG00005741
AMCG00005739 mRNA downstream 121745 8606283 ~ 8608058 (-) True AMCG00005739
AMCG00005759 mRNA upstream 12163 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005762 mRNA upstream 33758 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005760 mRNA upstream 34362 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005795 mRNA upstream 46707 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005792 mRNA upstream 56657 8786806 ~ 8792875 (-) True AMCG00005792
TU193709 other downstream 605118 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 728463 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 941482 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2233232 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2646937 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 360273 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 695141 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1585231 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1585231 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2113692 10843841 ~ 10912745 (-) False G154677

Expression Profile