RNA id: TU194160


Basic Information

Item Value
RNA id TU194160
length 2756
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G154150
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9095671 ~ 9108363 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTTCATTTTGAGGCCATTCATTCAGCAAAAGATTATATTGCTTTCTCGAATGAGGGGAGAGCCAGACGACTCTAATGGAGGGGATTAACAGGCAGAGGATTCCTTATTAAGCTGGGATGGGAGAGAGTCCACACTGAGGTGCAGTAGGGAGCGGGTCGGTGGGAGTCCACGTCCACAGCCTGCCTGGGGAGCCCTGCAGAGTCGGCGCCTGCTTTCACAGCAATGTCTCGCACTGCAGCCCACATCCACTGCCTACTGGCTGTCCTCCTCACCTGCACCCTGCCAGttcCTGCCGAGGGACCAAGCGCACCAGCTCAACCAGAGCTGGTCTACGCAGCAGTCTCCATTCGGCACTCCAGCCACCCATTGACAGACCAGCCTGTTAGCCAATCAGAACCTACAGTCTACTCTTCTGTGCGCTTCAAAAAGTCAAGCCAGGGAAGCTGTGTTGAACTCGGCTGAGCAGCAGCTCTTCCACCCAGACTCTCACTAGCCCAGCCTCGGGCAAATCAAAGGAGAGTCACAAGAAACAGACTTGAGACCCAAGCAATATAAAACATGGACTGTGTGGAAATCCAGCTCTTCAAGGGGAAGATGACACTTCAGACTAAATGAAAGTACAGGAAGATGGTAGCTCACACCACCAATTCACCAGCATGCCCTGCAGCAGTGAAGAACAGGGACTACCAGTAGGTCTGAAAATGTCCATTTTCAATCTCATGTTCTGAACCACTTAAATTGGAAGTGGGGAAAGTACTTTTACACAACTGCAATTAAAACCAAGGGGTATCTGAATGTTAAACCACACCAAGTTTGATTTAAGCATGGCAAGTAAACACCCTCTGCACTTGAGGATACCACAAAGCACATTAAACCACTGACCAACATGTGATtatcattttcactttcattgcAATTGTGTCACTttggataagggagtctgctcTAGTGATTGAGCTtcctttttaaacaattaaaaatgcatacattttctcCAAACTAATCTTGGACTGTTCTCAAATGAACAAGTTGCAAAAACTGCATCCACCCATCAGACAGTTTGGATTTTAACAATACTCTGAACACTTGTGTGGGTGCAGATATCCTTCAAGCATTAGCTTCAaggcaggaaaacaaaccacacaatcaagtacaaaaaaaaaaagtttattaacAAAGTGCCAACAGTGTGCTGCAGCCTCTAGTCCACTCAGGCTCAGGGTTGGCTCATCTTCAGGGCACCCAACTCTGCAGGGACAATACAGGTATACATTAGACACAGCTCTCACCGTGGGGACAGTCGGCGGCTCAGAGCTGTGTCTAATGTATACCTGTATTGTCCCTGCAGAGTTGAGCAGCCAGAGTGTGGCCTGATGGGCTGGGAGGCTGTGTGGAGGTGAGTCCTAATCATGTGGAAAACTAGACCCTATTGTGAACAACCTTGGTGAGTTATTTGCATTAAAGCAGGTTTCTTTAAGATCCCTCTGTACACATTCCATTAACTTTATGGGTGTTTGCAGTCTTTATAAACTGAACTCCAAAAGCTAGTGAAAAGCATTTCTATTGGCTAAGCACTGCGTTTTTGGCTGTAGTGCGATGCCGTATGTCCCCAGGACTATGGGCAATATTGCAAAGCCATGTGCATGGTGTAGGGTTGGGTGATATGACCTAAAATCTTTTAAGGTTTGGGGACAATACACAATGTATAGATTTCTTGTTCACCAAACAAGCTGCAAAATAAGACCAAATACCTAATTCAAAAGTTTTctttaatcaataaatatgcaaaatgtacCACTTGCCAGCCAGTCATAAATGTACATTATCCTTTTACCTGACTTTAAAggagtacatttaaataaaccttcTAGTATTGCtgtaaaaatgcacaaaataataaatgcatgtacTTGCcgtcaaactacattttgaagAAAGTTTGGCATACAAAAGCCTGAAAAATCGACCATGAAACCTGCAGtaattgtaaaacaaagtatagttttgttttatggtcACATTACACAATGGTAATCGCACAACCCATGCACTGTAAAATAGTGTAGGTTCAGATTCACCACATCTGGGTTTTGTGGTGCATTTGATTTGTTCTTGCTAAACCAGTAAATTACTTCACTATGATGGTATGGTTTAGATTTGAAATCTGCTTATTGGTACAACACTGTATtatagttaaaatgtatttgcttgtttttagtGTACAATTCAAACATTAACCGTTTTAACTTCATTATCCGCTTTTTAAAATTTAAGCGGAACATTCAACAACATAACTCcacaaactaataattaaaataacactgcACTTCATAAGCAGTTGCATCTCCTGATTTAACCATCTCAACTAATTTACAAACAATGCAAATTAGGTGGCAACACCACCGAGACGCATTTGCTccaattttaatttcttctccCACCCAAGCTTTATAAATTAAGGCGATTGGCCACACAAATGATTGACAAGAatttcctgcaaagtgattggctgTGTAATTTGTTACTCCTCCCATATTCCATGGTCTTGGGAACTGCAGCTATAAATGTCATAAATCGGAGTGTGgagtttgtcatttttaaatattttgcattttaaactacaTCGCCCAGCCCTAGCATGGAATTGTTGGGACCCTGCTGCTGTGCTCTGCTTTCCTGGGGTCTGCCTCTTCCTCTCGCATGTTTGCTGCTGTATGTCCCAGTGATGAAAACCTTGAGTAGGAAGTGCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194132 lncRNA downstream 70792 8987281 ~ 9024879 (-) True G154126
TU193982 lncRNA downstream 365522 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 507449 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 1074031 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 1111740 7982030 ~ 7983931 (-) True G153778
TU194169 lncRNA upstream 24972 9128770 ~ 9139826 (-) True G154157
TU194270 lncRNA upstream 221724 9325522 ~ 9330533 (-) True G154234
TU194271 lncRNA upstream 227545 9331343 ~ 9332033 (-) True G154235
TU194274 lncRNA upstream 239957 9343755 ~ 9393333 (-) True G154237
TU194299 lncRNA upstream 332082 9435880 ~ 9437899 (-) True G154260
AMCG00005747 mRNA downstream 42245 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005748 mRNA downstream 64993 9027129 ~ 9030678 (-) True AMCG00005748
AMCG00005744 mRNA downstream 162213 8906411 ~ 8933458 (-) True AMCG00005744
AMCG00005743 mRNA downstream 200356 8886096 ~ 8895315 (-) True AMCG00005743
AMCG00005797 mRNA downstream 271635 8821543 ~ 8824036 (-) True AMCG00005797
AMCG00005776 mRNA upstream 78717 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005778 mRNA upstream 90634 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005779 mRNA upstream 100117 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005777 mRNA upstream 169987 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005786 mRNA upstream 230261 9334059 ~ 9339730 (-) True AMCG00005786
TU194148 other downstream 3098 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 970986 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1094331 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1307350 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2599100 6490255 ~ 6496571 (-) True AMCG00005674
TU194289 other upstream 321492 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1211582 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1211582 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1740043 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1802497 10906295 ~ 10910432 (-) False G154677

Expression Profile