RNA id: TU194270


Basic Information

Item Value
RNA id TU194270
length 4759
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G154234
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9325522 ~ 9330533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacagttttaacgTTTTAATTTTCCCCATCACCTTTCTCCCACAGAGGGCTATGCAAGTGCACAGCAGACAAAGGACATGGCACAGTGCAGTACCACTGCAGTacagcagggtgtgtgtgtatgtgtgcatgtatgcaaAGCAGGCATTAGGACTGTGGTTCTCTATCAGAGGGTCATGCCTGCCACAGGGGAACACAAACAGACTGCTGGAGGTCTCTATCTACAGTCTGTAATTAACTGATTCTTAACTGTGATCACTACCCAGTTTGGTATGCTCTGTTTCTAGGCAACAACAAGGACAAACTATACCAAAACTATTGCTCGCTCAGGTTGGCGACAGGTCTTAAGTAGAAGTGCACATGTCACTTCCTGCCCGATACCTTACACATGGATTCatgattaaaactaaaacaaaaaaacgaatatCATGTTTCAGATAGCTCCaacatatattaataacagttttaagaaaatatactgaaaatatataccAATATTTATCTTAAGGGGgtcacatatatttttttggggAGGTGGGGCAGAGGGTATCTGGTGGGACAGGACCTTGGCACTGTCAGCTGGGCACACCAGTCAATGCCCAAGAGGAACCACCACCTACTTcccaaacaaacacagctaTCTGCCTCCAGGGACCCAAAGTGGGAGAATATACCATCTAAAAGACTGTTTAAATAGGCAGGGTTTGCAGGAGGGAATTTTCAGAGCTTTAAATCACAAAATGATTTTGTGAAGTTCCATGCAGTCACAAACTACAGGACTAGCCAATTAAATAGGAATGGTGAAGGGGATTTAATTCCCGATGttagtatttttgtaaatttaaaataaaataaaaaaaataaagagaaagacCTGGAATTTAGTTTGGcacccaaaaaaacaacaattgtaGCAGATTGTACACTGTATCACACTGTTCTGGAGAGGAACAGGCAACACTCCCCCACAAACACTAATAagactcccccccccccccccatcatgGAGAGGAATCCTGCATTCTGATTTGCTGGGCTAGCACCCCAGACCACACCTGACTGGAGCAGGGGGTGCTCAGCAGTTCATGGGACTCCCTCGCCAAGATTATATTCTGTGACCAGAGCCAGAGGAGATCGAGAGCCTCGGCTGCATGAGCGCTCCTGAACAGCCAGGGTGACGCACACACAGCAGCGACTTCAACAAGAGACGCACTTTCATCACAGAAAACAGTGTTGTGATCTGGTGGATCTTTGGCAGTTCTGTTCCTCTGCGCGTCTCGTTACAATGACTCAGAGGCACCAGGCCGTGTGCTGCCCTCCTGCTGCTCGGGAGTCCGTGGGTTAATTTTGAGATAAgatcacattaaaacacataagaaaataaaaggtcaGAGAAAACTGTAACGAGAAAAGAGTGGGgaggaataaatatataaatctctAGAAAGGCTCTTTGTATCTGCAACCAGAACAGAGGTGGCCTCAGACTGAGCTCAGCTCTCCACAAACAGCTCACTGAGAGGCAAATGCTTTTCCACAGCAGGAGGAAATAGAACAAACGGAAACACATGGAAAAATAGAGAGCTGACCGCCCCCCCCCAATGAGCTGGAGGGAGAAGGACATATATAGAGCGAGATCAGACAGATATGAAAGACCCAGTTCACTGTGTACTCTAAACATTCCCAATACACATTCTACAGTCGTGTGACATAAAAAAGAAGCGGTGGGAGTCACAagtctgcacacacactgtgggGGACGCTGTGGCTTGAGTCTGGGTCTATCGGCCACTCTGGCGGCTGCACTATTCCACCCCTAGTTCTGACGATGACCGGTCTATCTGCCACTTTACAGCCCCTCCCTGAGCTGCCTGAACACATATCCAGCTTTTCCAGGAATGccataatgattattattgtaatacaagCTTAAGTTTGATTCAGAAATGCCAGTCGTGTACAGGAGTTAGGCTGAGAGCTGCATAACTTAATAGTTATAATCTACCACAACTTCAGCTTCAGAGTGTGAGAATGTGCATTTGGCTGCGCTATCTTCATCTAAGTGGTTTGGCCGGGATGGTATATGACCTTCCAAGTCACAGCAAAGGGGATCCACAGAATGGCACCTTGACACTGCAGTCATATCTACACTTCACAGCACAATACAGACACCGATGCCCTGAGGCTTGTATGGGAATTGTGGTCAGTGTAAGTACAGTGAGACTTGAAACACAACTGTAGTGAAAAGTGGGAGGGGAGGGTAGTGTCTCAAGATAATAGGGGGACAGCTGGGAGTTCAAGTTCACCCATCCaagtttttcaatattttgttgttcgatattaaaacaaaaacaacaaaaaaactatccCCCAGAACGCCCACAGAACAACGCCACAGACGTTCTACAGTATCAGAGAGGAGACCGCAATAAGGAAGCACAGTTCGAGAACGAGAACGAGACAGACCGACAAGCTTGGATAGCAATTGTCACAACTTCAAAAAAAGAACCATATTGGACTGCTGTAAACTTCTCCCCCACAAAGTGCAGAGATGTTCAATACGTGTGATCCTTTAGCAAGTTCCCATGGATTACAGCCTCGGCCAACCTGCCGTGAATGAGGACTGGCTGTCTGCCACTGTTAGATGCTGTCCAGGGCTGACAGGGAGTGTGGAGTCAAGGAGGCAAGAGCTGCGGTTTGAGAGATGGCACAGTGCAAAACACGTCAGACTGACTTGGCACAAACGGGGCAGGGCTGCAAAGGAAGGCACACAGCTGGCACACAGCCCCACCAACACCTGACTACATCTGGACAGCATTAGGCTTCAGACAGAATGGCTTTCTGACCCGCAgggaagaaaagagaagagCAGAGGGTAATTCACAACCTCTGCTGAGAAGGCATAAGGCTTAGAGATGGGACTCCCGGCTTCTCAAGGCAGAGCAAagagaaaacagacagaaaaacagtgaCATACAGGCTGACTGGACACATTCACATCTACTGGACAAGCtctataacaacaataataaaactacaCAGAGGCTCAAATCAACTACACAGAGCAAGTAGAGTCAGTGCTATGGCGGCTGTTTTCCAGCTGTTGGCACGGCACGGAGGAAGCAGCAGAGCGAGTCTGTTTGGTGCGGTTTTTAACGGTGGCGCCAGTAGGCCATGCAGATTTGCTCTCCAGTTTGAGCAATGCGTTATGCCTGTCTGTGCTGCCGGGCAGAGATCGtccaaaaaaaaatcccagtcTTAAAACTCAAACACTCAAGCTGAATTGCTGAAGGCGTGACCCTCCGCGACATCAAACAGCCAACACTCGCACAGCGCAACGCAACAGGTCACTTGTTAACTTTCTCTTGGGTGGCGTATGGCTGCTGAGGGATGTGAGCCAAACTGTCAACCAACCAATCGCCTAATCAATCTACCCCCGGAGGAACGGGTAAGACTCGGGTTGCAGGGCAGTTCAAACCCACAGGTTGTACTGGTGAAGcagaaaaagcaatacatttcagatttgaaCTGGGTGCGCCTAGGTTTGCTAACTGAAAGGTTTTAAGCATGAGGTATCCAGAAAAGGGGGGGTAGGTTAAATAAGAGCCTATATGCCCCTGAAAATGGATCAAATCATATTCTAGTGGGAATGTTCctctgctgtgagatgttaatAAGGAGGCGCAGGACTGTGGAAAGGCAAAAGGCAGCGCTCGTGAGTTTCCCATGACCAACGAACACcgcacaggaaaaaacaaaaacctgtgaGCCACAGCAGCGAGATCTCAAACTCCCCTTTTACAACattttcagaacaaaacaaaaaaaaaatacaacaacaacaacaacaacaacaacaataataataataatgatacaaaaaaacatgtaaaaataaattccagTGTTTTAGTCAGTACTTTAGTCCCGGAGAGGTACAGTTCAACAGATATttccacaaacaaaaacaaaaaaggttaggCCTCCTTTCCATGACAACAGAACTACCAACCGCGAGGGCTTTTAGGCCGGGCTGTGTTGTGAAGGCCCTCTCCCCGCCTCAGAAAGCGGGGTGGGGGTGGCGGCCGTCTGGATGAGAGAGTCACTGTACTGCAGCCCTGAGGAAATCAGGCcatctgtctgtccgtccgtccgtctgtctgtATATTCACTGACAAACTCCACAGGAAGTCCACAGTGGGGTGAGGCCACATGGAAAGACCCTGGGGGTGTGTGCGATTCAGCTGgggagagggtgtgtgtgtgtgtgacggggGGGTGGTTGATGTGGTGGGGAGTTACTCTCTGTAGTAAGAgacccagagagagagcgagagagagagagacggaggtcTGAGAGCACACTGCTTTGGTCTACACTACCACCTGGATCTCATAGCCTGTTTCTGCTGTCCTCATCCTTCTACCTCTCTCCTCATCTCTCACAACAAccccttccttctctctctctctccatcaatcctctgcctgcctgcctctctctctctctctgcccccccagcccctctccctccctctccgcGTCTCACTGTTTCTTCTCACGGGTGGTGATGGTGACGAGCTGTTTGGCGGCCTTGGCGATGTCGTAGGCGCACTGGATGACCTGTTGGGTGAGGAGCTGGTAGTCCACGGCCACGCCCGGCTCCGGGGGCACCGTCTTCCGGCACTCGCTCTGCAGCCGTAGGGCACTGGCGCTCAGCAACCGCAGCGAGCAGCGCACCGCGTCCAGGGCTGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194169 lncRNA downstream 185696 9128770 ~ 9139826 (-) True G154157
TU194161 lncRNA downstream 217159 9095671 ~ 9108363 (-) True G154150
TU194160 lncRNA downstream 221724 9095671 ~ 9103798 (-) False G154150
TU194159 lncRNA downstream 222087 9098172 ~ 9103435 (-) False G154150
TU194132 lncRNA downstream 300643 8987281 ~ 9024879 (-) True G154126
TU194271 lncRNA upstream 810 9331343 ~ 9332033 (-) True G154235
TU194274 lncRNA upstream 13222 9343755 ~ 9393333 (-) True G154237
TU194299 lncRNA upstream 105347 9435880 ~ 9437899 (-) True G154260
TU194320 lncRNA upstream 241682 9572215 ~ 9572908 (-) True G154280
TU194453 lncRNA upstream 759021 10089554 ~ 10091616 (-) True G154391
AMCG00005777 mRNA downstream 42782 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005779 mRNA downstream 119061 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005778 mRNA downstream 124229 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005776 mRNA downstream 133461 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005747 mRNA downstream 272096 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005786 mRNA upstream 3526 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005785 mRNA upstream 19901 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005765 mRNA upstream 108528 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005766 mRNA upstream 145044 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005773 mRNA upstream 169495 9500028 ~ 9508536 (-) True AMCG00005773
TU194148 other downstream 232949 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1200837 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1324182 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1537201 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2828951 6490255 ~ 6496571 (-) True AMCG00005674
TU194289 other upstream 94757 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 984847 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 984847 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1513308 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1575762 10906295 ~ 10910432 (-) False G154677

Expression Profile