RNA id: TU194289


Basic Information

Item Value
RNA id TU194289
length 9509
RNA type TUCP
GC content 0.51
exon number 4
gene id G154250
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9425290 ~ 9434940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTATGCAATTCTTTTTATtgctgatttgattttgaatatagaaaaaaaaaaaaagtacattattcactggcttttaaaaccacaaaaagcCCATCGACATTTTTATGACATCATACAAAATAGGAGGGGAACAAAGAATCCCCCGAATGAaatttatacaaacaaaaatactgaaTTATAAAACCTTTTGacatgcaataaatacattcattttatttaagcaaTAAGAACATTGTAATGTAGAAAAATACTGATTGGTTTTTGTGTATTGCAGCCTAcgtaaaaatgaaaccaaaccaaaaaatatatatatatatagtgagagagagaggtgatgATGAAACCCCTGGATATTTTTCATGTTCTAACAAGATCAGCTGTTTGTTTGGCGTGAGGGTCTTGTCCCTTCCTGTCACAGTGCTAAGGGTGTGGCATCTCTAGGGGTTTAAATGTGATCTCCCACTCCCACACAGATCTCTCCCCTCACTTCACAGATCGTTAAGGCACCGTGTGGTTAGTTAATCTACAGTCGCATGCACTCGTTATCCCCAGCCACACCACCAGCTCTGCTACGGTAACCCTCAAGAACGTCGGTGCTGACCCCGGATCTTGATCGAAACATCAGCACTGGGCGTGTTTTGAATGCCATCGTAGAGGAGAGCACGGGGAGAGTGGCGGTGGGGCAGGGTGGCGGTGCCAGAGCGGCGAGCCTGGGTCCGCCGTGTCCCGCGGGGCTCTGGAACAGCGCTCTCTCCGCCACACAGCCAGGCATTCGGCAGCCAGTTTAAAAATGGCACTTCAAATTATAGCCCACTCGCTCGGAAAGTGCGCCAAACCTGATTAAATCTGACCTAATCTGGCGCAGTGGGAGGGAGATGTGTGGCTTGGTGCTGTCCTCCtgtctcctgtctgtctgtctgtcacatCCGAAGCCCTTGTTTCTCACGTAAGACAACATGATGGGCAAATGTATCGCATCCATTTTCATATTCTAGAAATGGTCATAATTTCATATTCTAGAATATGAACACAAGGTCAATGAAAGTGCTTAATTTTTTTGGTATATGTAATTTGTGAGGGGGAAAAGACAAAACTATAACATTAATATCATAGTGAGACAGGTAGTTTAAACAGAACTCGGGGGCACGGAGGGCAGCACTCTGCCTGCAAAACTACAGCCGAAAGCCACACTCTGACAGGAAATGCGTCCCTCCCTGAGAAGCGACTGCGAGAGCTGTGTAATAACTGCTGGCAAAAAGTGCTTCGGACAGTGGGGAGTCGGTCCCAAACTAACCCAAGCTAAGTTTCCTGTTGAAAGCTGactattgtgtttgtttgttctgtgtttatAATTGCACTTTTAGAGGCCCTGGATTACACTGGAATTCGATCCCAGCGTCTCAGAGCGCCCTTCACCTAAATAACAGTAAGCTCCGTCTTTATTTACCAAGATATATACTGACCGCTCTATAAATAGTGCTGTACATCTGTCCTGTCAGAGCAGAGCTGTGCGACATGAGAACTGTGATTCAGAGACGTTTGGCAACAGCGGAGACATCCGCATTAAAAAgcctaattgtattttttttgtgtaaacCAGTTTCGTCTGCCGAGTCCACTGGCaccctccccatctctccctcaCAGCGAATCGTCCAGACTGGCAAGGCTGCGGACACACTGGGATTGTGCAACGGGAATGTTTTCTTTGGGTTTTtcgttttttggttgtttttctctttactggcatctttttttcctttgctaTTTCCACCCTAAGGATGAGGCCGAGCCTGTGTTTCATCATTCCGTTTCTCTTTCCCTCCAGAGTGTGGGAGTTTGGTTGGACGCTGAACTCTGACGACTTTGGTTTCATGAGCGCCGACAGCCTGTGACCTGGTGCACAGCGACCCCGGTTCCTTATACTTCAAAGGACAACTCCACGCTGCTGAGACGCAGAAACTATTTGGtcacaaacttttttttgtatggtaAAACTGCAGGCACTGACCGAtcactgagaaagagagaggtggACTAGTGGTTAGAGCTGAGAGGTGAGAGGCAGTCTGGACTAGTGGTTAAACTTGGGATTtttggagggagggagggggcaaTGTGTGCTAGTGGTTAGACTTCAGGCcggggggagacagagaggtaGTGTGGGCTAGTGGTTGGAGCTgagggatggggagagaggCCGTGTGGGCTAGTGGTTAGGGCCCTGGGGTTTGGTGAAGGATATAAATCCTTTGTCTGAACTGTCAGAAAGTTATTAAGTGGGGAAACGGTGCAGTtttctgaataaatatttaacagctGGATGTAATAAAGGCTCTTCAACTGTAATGGctgcctctcccccctccctgcGCCCCCACCCCGGAGGACACAGCTGAGCCGGGTACCTCACAGTGCAGAAACACAGCTGGGTTGGCCCACATTGCGGACTGATCTATACACAGTCCCAGCCCAGTCACAGATCTTAGTcaacacttattattattatttcaactttaaatacaatatccctgcaaaaggaaaataataaaaaagaaaataacagtatgaaacaaaaaacactatcttttatatatatatatatatactgggaAGTTTGCATTTAATGCTAAAATACTGTCTTtcgtgttttaaatgtaaaggtgATGGGGTCTCGCCTGCTGGAGGAGTTTTAATAAGGCAAAGTCTGTGAATGCGTGGGGGTCCGATGCTCTGTACATTGTATTTGTGTCCACACCAGAACAAACCTAAATAGTACAATTGTTACAGCACAGATGAAGTATCTTTGTTTACTCAGAACTGCTACctgcttctgtctgtctgtctcgctctctccccCATCCTTCCAGTGTGACCCCGCAACTCTCCCAAGCTTTCTCTGCCTCTGACAGATGTGACTGTGGCTCCATAGCATACATACTCTGAGTGCACAAAGCTCACAGTAATGCTACAGGGCTGTGTATAACAcaatttcttctcttttcttggCCCAGGACCTCATTCCAGCCCTGATATGGGTGGCTCAGGCCCTCACCCCTGTCTTGATAGCTGGCTTCTGCACTGCCTGATCAGCCTTGACCCGCCAGAGGGGAACTGGCCACAGAGTGATAACGCAGAGATCATTTGAGGGGTGTTTTATCAGAGTAATGCctcacaaatataaaaataaattgtgaccTGAAGACGGTCTACTCCtcaaagaaaacagacaaaaccgGAAACATAGCGGCACTGTTTCAAGAGACGTGGGGTGACTACAGAGCGGCCGGGATGAGCAGAAGGAGGCTAATTTTAAACTCTCGGACACAATGTTTtccaaacaagacaaaatagaaaaaggaaaggacccaaaaaaagaaaaaagtacacaaatatgcaaaaagaGAAGCGGTGTGGTTTTTCTCAATGGAGCGGAGTCAGGGGGTCAGTCCTCACTCCCAGTGTCAGACAATGGGAGCAGCAGCCCCCTGCGCACCgcgctccctccctcccgcgCTCTGAAGAGCAGCCCAGCGCACATCCTGCCCAGGGCTGCTGGTACGCCaagacaccccccaccccctctggGCCCTGAAGCAGCCTTGGCTAACTCTGACCCTCATTCCTGACAATCGCACAGCCCTCCTCAGCCTAAACAGAGCAAACAACAGCGCGGCtccttccctcccctctccctcccgaGGATTTCTTTTCACTGCAATGGAAAAACTTGCTCCATTTTTCTCTcgtcttttctatttttttttctttgccctGATAGCAGAGTGAGAgtgaatgtaaataaaatgtctgatCACAGCAGGATGAGAGGGGAAGTCATCAAGCAACACTTTTCTGGTACCCAGCCACTGtaatttattatgatgattattattacagccTGGCGCTGGATTGTGTGTGCTGTTCAGCAGGCACCAGTCAGAGATGGCAATCGGAGCCCATCTGAGCAAGGGCCCCCCCCTGTAAACCTGGCAGAAGGCCATACCTGCACTACCATCTGCCAGCGCTCGCCAGCTCTCCCTTAGCCCCGTCTGCAGCTTTGCCAGCAGCCCCGCCAGCAGCCCTTAACGCCATTAACCCCCTCCTCGCACTGCGTGGAGCTCCGAGCAGAGGCTGGCACACGGGGGCTGGCTGCAGAGCACTGGGAGAGTTCGCAGGTCAGCCTGCTCACAGCTGTCTTACAGGGAATGGATTGTTTTCTTGGCGTGCCTTGTGTAGGTCTTGCGTGGGTATGCCAAGACACGTTCTCATTGCGGGGGGGCGGTTCTAGAGCTTGCATCGGGAGCACCGAGGCCCCCCACTCTTAGTTGCCGTTTGAGAAGGTCCAAACAGATGCAACATCTGCTGCTACAAACAACCTGGGGGGTAATTCTGCGCCTTCCCATACATACTACAGACACAAGTGCTCACCCTTATAAAAGTAGAAAAGAGAGAGATCAGAAATGGGGAGTTCTTCCTGGTGTGGAACAGTTTCGAACAGTGACTTTGCCTTATTAAAACTGAGTTACTGCCACAAGCAAGACCTCAGTAGAAATGTTGTCATTTCACAGCGCATCAATCACTATTTCCGGAAAAATGttcaacaaaaaaatgacaatctGACCACAGGTTAAAGGGACGACTCATCCCACCCatccctcccaccccccaagCCTGATCCTGGAgtttgtctcctctctctccagacaCACTGCCCCTCATTGGGAATGGTTTGGATCCACATACAGACCTGAGGTTTCACCAGTTTCaattagcagaaaaaaaatgatgctACAGAGAGTGCTGGACTCCCCACTCACCACCACCGCCCAGGGCAATTATAATAAGGCACtcttgcccccaccccccaatctTAACCTAACCAACATGCAGCTGTTGATGCTAGAAACAGTATTACAGATTAAAGTCCTTATGGCCTTTGGACACAAAGTAAATTCAATCTGGTGACCCCAGATTGACCCCCATGGTGATGGCAGCATATTGAGATGGGGCTCAGGTTCCCATACAGGGCCCTGCAGCAATGCTATGGATTCCTACCTAAGCCATTGCGTGGCCATTGGGGGCAACACTCAAAACAGGTTCAAGTCCAGGATCTGGTGACATGAAGAGTTTATATTGGTCGTGAAAGCCAGAGCATGTCATTGAATTCGCTTTTGAATCTTTGGTGTGCGCGATTGGGCTTTGTGCCCTTGCTACTGGGCTGGcagggagggagtggagcaaAAAAACCCTGGTCTCGCCTTTGAGAAAAGTGAAAACTGTTGGGGAGTGCTGCGATTTTCacagggattagggaaacagcTGGAGCCTCTGGTGAcccgacagagagagaggcggtGGGGCGGAGCGAAACAAAGATGTAATTTGTGTAGGGTTTAAGATTAAATCAttagcagattaaaaaaataaatatttgagtaTAGGTGATGAAGTGGCTGAGGTGTGATCTCAGAGAGGGCAGTGAGTCATCTGTGTGAGGCCCGTAGAGGGGCGTGTGCAACGGTTAGTCTCTCGGCAGAGTTAAAAGCCAGGAGAGGCAGAGTTTCCCCAGCGGTGGGAAAGCTCAGAGAAGGCAGATCAGAGTGCAGACTCTCCCAACCCACCTGTGTTTTAATAGCTCTCACAGTGCCGCTGTTGCCTTGTaattgctgtttgtgtgtgtgtctgttttgtcaGACTACACATACTACCCTAAacctgaagtctgaaatttcCCCGACacagaggaaggagagggaaaaGGCAGGAAAGAGGAGACCAAGGTGATCAGAACCAGTGCCGATGTGAAAGGGCAGCCCGTGGCATCAATCTACAATCGCAGCACTTTCCGTGAGTCTCAATTACAATTGCAGTGACATTTCGAGCAAAATGCTGTTAAGCTGACGACTTGCGACTTGTAAGGTGTTGCACAAAGCAGTATAATCGGGTATATTGTACATTACAACTGTCAATAAGCACGATATGTCTGCAGAGGATCACTTGCTTATCAAGTTTTGAAATCTTCAGCATGACTGGACTGTCACTGAACTGCCTCTTCACATGTAGACAATAGGTTTCTGAGGCTGTCCTCCGGGGGTGTGTCCCCAGGCTGTCGCCCGTCAGTCTGACGTCCCTCACAGCAGTCAGACGAACACACAGCGCTCGTGTAATGGCGTCTCTCCAGCCGCTCCCAGAGACTCCAGACTGACACTGAGGAGCACCGAGGACACAACCCCTGAACGCCTGTTAGACTGTCATGCTGCTTGTGTGTGGTAAGCTGTTGCAGTAGAAAGGAAAGAACATCACCAGCTGGACTGCCCCTGTTTTGGGGTTCGGCCCCAAATCCACCCCTTTGTGCCCACACTATGAAGTGGTGATTGCAACCACTTCACCTAATTGGCTATATCGCGGTTGTCATGTCACGAAATGAGGTCAGACACCTGCTCTGGTGTCGGCCCAGACCTGACAATCGCAGAGAAGTAAAGCTGCTCTCTTGGCCCTGGCGTTAACGTGAGTGgctgcacagtcaaaacagcTTTCCAAAGTAATACTGCTCTGAATACACTGATGCACCCTGGCTGACAGGACATATGTCTGACACAGGCTTAATatctttatataattaaaataaatgtgttaccTAATAGAATCCCACAGCCCACTTCCAGGAAAGAGTGAGTCCTCAGTAActgatgctgtgtgtgtggggggggggacactGATAAATTATGGAACTGCTCTGAACACCTGGGGAGCAGAGAATCCAGcaccaaaaaaatgaaattaaaatgaagaattaaaaaGGTCATCCAATGCTTGTAAGATCCCAAAGGTTTGGCTTTGACATGGACTTCTTCCACTACAACCCGCGAGTGAGATCATGAGAGGCCCTGAATACAGGCTGCGTGCTTTATCTTTGTATATACACTCAAACTGTGGAGTACACAGGTTTAGGCCGACTGCAGATGTCTTTCAATTGGTTTTCTTTGGCTTTCCTTTTAAAGACAAGAACTGGaatagacaaacaaaaaacaacaaaaatatgcatCACGATTTTGCGGCTTGGAGGCTCACTGACAGTCTGTATAAAAACAccgtattgtgttgtgtttgtgtgccatagtatataaaatataaataagcacattaatacaaaaaaaggcaaaattgCGAAGGCTCTAGAGTTGGCATAGAtttataaaaagagaaagaaatgaacCTTTTTGGAAAGATTCGGCTTTGGCGACGGTGGCGAAGCGAGGCGGAGGAGAGAGGAGTCCTCTCTTTGTAACAATCCGTCACCTGTGCTTTGGGAAGGCTTGTCTCTGGGAGAGGGGCTCTAGCTGGGGGAGTAGCGCTCGATGGAGCGGGGCTCTGCAGACTGGTGCTGGGCAGGCGACTGGCTCAGCACCTCCATCTTGTCGTGCATCAGGCCCAGGTGCTCAGCGGCCAGCTTGGACAGTGGATACAGGCTTTCCATGGCCTTGGCATCGGCCAGCAGGTGCTGCGAGGCCTGGGCCAGGAGCTCTGAGGCTTTCTCCTGCTTCAGCCCCAGGTGCTCGGCCGCGTACTTGCTGAGTGGGTAGATCCCCTCAGCGGTGAAGTCGATCTTGAGCTTGCCGTCAGGCGTGACCCCTGCGGGCGTCCCGGCGCTGTGCATCTTCATGTGGCTGATGAGGTTCCGCTGCTGGGCGAACTTGCCGCCACACACCTGGCACTCGTAGGGCTTCTCCCCCGAGTGGATGCGCATGTGCTCCGTGAGCCGGTACTGCCGCGTGAAGCGCATGCCACAGGCGTCGCAGGCGAACGGCTTGAGCCCCAGGTGGCTGCGCATGTGGCGGGTCATGGTGCCGCGCTGCGTGAACTTCTTGCCACAGATGCTGCAGGGGTACGGCCGGGTCAGCCAGTGCGTCTTCTCATGCTGCCGCAGCGTGGCCGGGTCCTTGTAGGACTTCTCGCAGGAGGCGCAGCGGTAGGGTCGGATGATCTCGCCAACCCCCACCAGGCTCTGGCTGGTCTTGCTGTCCATACTGGAGAGGCTGCTGATGACGTTATTGCCACCGCCATCACCGCTGATGTTGTTGTgggtgttgttgctgttattggTTAGTGACCACACCTCCTCCTCCGTGTGGGCCTCCACGTGGGCATTGAGCTGCTCCGAGCTGGGGAAGCCCTTGTCACAGGGGACGCACACGTACAGGTTGTCCCCGAAGCTCTCGGGATCGTACCCCAGGCTGAACCTCCTGCGGGCGCCGATGGGAGAGCAGCCCTCACTGCTGCCCGTCTCCTCACTCGTCCCGCTTTTGTCGTCCTCACCATCGCAGCTCATGGGGTACCCCCCACCGCCCTGGGGGGGCAACAGCTTGTCCTCTCCTGGATAGGGCAGATGCTCTTTCTTCATCCAGTGGTAGACTGTGCCCCCCCCACTGGGCTCCTGCGTCCTCTCTGCCATCTCCCCTTGGGGGTCAGAGCCTGGGCTCGGGGGGCAAGGGAAAGTGTCCTGGAGGTTGGCGGATGGGTGTAGTGGGGGATGTGGGTTTAAGTGCTGGTTTAAGTGGGGGTGGCTGTGTGCCAGCTGAGGAAGGGGCACGTGGGACTCTTCAAAGTTGGATTCCCTGCCTGGGTACGAGCCACCGTTAGTGCCCGACAGAGCGGGGCTCTCACGCCCCCCACCAAGTTGCGCAGCGTCCCCCCGGCTCTCGTGCAGGGCCCCGTCTGGGTGCAggtgggagtgggggtgggggtggtgcgATGGGGCCTGTGACTGAGAGCTGGGGCTCTTTTTGGACAGGTCCAGTCCATAGAGAGGCGAGCAGTCCCGCTCCGAGGGGCGGTGGCCAGAGAGGGCTGAGGGCGGCTGCAGGGAGGGGTAGATATGACTGCCCTGAGAGGGGGGGGGGTACAGCTCCCCAGTGCGAGTGTCCATAGGATGGGGCAGCACGGGGTCCATGGGCGAGATCTCCAAGGGGGGTCGGGGCGGGTGGCTGACAACCCCCCCGCCGAAACAGGACTGGATGACAGGGGTGGAGACCCGGAAGCGCCCACTGACGCCTGGCTGGCCAATCTTGGTGTAGGGCGAGTAGCTGGTGGTCCGGATGTGGCTGTACTTCCCATTGCGCTTCAGCTTCTTCTTGCACAGAGCCACCAGGTCCAGCAGCTGCAGGTAGCTAGCAGCTGCCAGCACGGCGCCCAGGTTCTGCTCAGAGGCCGGGTCGCCCTCGCTCAGCCGGCCGGTGTAGATGTAGTCCAGGATGATGCGGAATATGCCTGGGCTCACCATCTCGTGGTCCAGGTTAATGAGGTTGTCGTGGACGACCAGAGACTTCAGGTAAAGGCTGCTGGCCGCAAGGATGTTCTTGTGTGCCCGGAACAGGGCATTCTGCACTACGATGATGACATCACACAGGAAGCCTTTAGTCCGCTGCGAGTTGAGCTGCAGGAGCAGATGCCTAGCGTGACTCGGGACCTCCATGACATCCAGCATCGTCTTCAGACCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194274 lncRNA downstream 31957 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 93257 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 94757 9325522 ~ 9330533 (-) True G154234
TU194169 lncRNA downstream 285464 9128770 ~ 9139826 (-) True G154157
TU194161 lncRNA downstream 316927 9095671 ~ 9108363 (-) True G154150
TU194299 lncRNA upstream 940 9435880 ~ 9437899 (-) True G154260
TU194320 lncRNA upstream 137275 9572215 ~ 9572908 (-) True G154280
TU194453 lncRNA upstream 654614 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 702488 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 709543 10144483 ~ 10144931 (-) True G154400
AMCG00005785 mRNA downstream 53868 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005786 mRNA downstream 85560 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005777 mRNA downstream 142550 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005779 mRNA downstream 218829 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005778 mRNA downstream 223997 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005765 mRNA upstream 4121 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005766 mRNA upstream 40637 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005773 mRNA upstream 65088 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005771 mRNA upstream 86358 9521298 ~ 9535270 (-) True AMCG00005771
AMCG00005772 mRNA upstream 137997 9572937 ~ 9580695 (-) True AMCG00005772
TU194148 other downstream 332717 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1300605 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1423950 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1636969 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2928719 6490255 ~ 6496571 (-) True AMCG00005674
TU194621 other upstream 880440 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 880440 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1408901 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1471355 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1475576 10910516 ~ 10912745 (-) True G154677

Expression Profile