RNA id: TU194464


Basic Information

Item Value
RNA id TU194464
length 1498
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G154399
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10137428 ~ 10138925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGcggatttattatttgaaatcattcaAGAAGGCCTACAGATACCAATCAATGCATTGCTGGCACATgcaaataacacacaatgtattattacataaagcaaaagagagaactgtaacaaatacatgttaaacagaaagcattttcctCTGCAACATtgacaagaatacatttcaagtagaagagagaagtgcaaCAAATAGCCGATCATAAGTGCTatagaaagcatgttttcttttcatgttaactattaataatttcatattgtgtttgaatatctgtgttattcattaattatacatttgaaagaatgcatGTTATAGTTATAAAACGCCAAATGTCTGTCGAGAATAGCTGTACCAATCAATCAGAAATTGCATGTTGGCACATGACaacaccaaaatgtaaaattagaaaaagtagaagagagaagtgtaaAAAAACTTGTAAAAAAAGTGCCACATACAGCATTTCATACAACtattaacaataattacatattgtttgAATATCTGAGTAATTAGTTAACTATAgatttgtccccccccccccccactctaaTACCAACActgtcaggaattattttgcctggggtcCCCACATactctagaatcgccactgATAGGGAGGCTGTGACATTTCCACTTGCTGgtttgagctcagattgagtGAATTTGGAATTTGGAGATTGAGctggttttggaaatgccgtgtatatgaacatgactgattcaggggcatcagccagtgctgtgaaaacactgcgagtgaaacgcaggtccaaatggcaccgagtgcttttactccacagatcaatacgcgatgctactacacagtacacagtgcaatagcgcagcacatccaccaaaataatgattcagggacattatcagtggaggagcatttattgcgatgctatatattcgtggagtaaaagtgtcacctggagaggctgtcacaatgcagtgtgagggacgagctcctgcagggaaagtgcagaaactgtcctgtgtgactgtacGTGCTGTCAAGTATGCAgtctaaatatatagtaaatagtttattgaaatacaaaactacagcgAATACAAGCAGTgtatattgaaaacaaagtttacacagtgttgaaaatgtttactttagtgtacaattatgtgttgataaatgcaataatctataaaatattgcttttgggcattattccaatatttacgtttgcacttttttcattcccttattgtatgtcatttttgagttttttgcttattgtaggttatgtagttatttatgttttgactgcagtgtgcgagtttagaaaaaaaaaatgtgtattgatgttatttatagcaataataataataataataatgttttatggtcatatttcaatttaaatactctaGTTATgctatgtaaatataaatgttggatttgatattcatgaataaaacttctgagtttcttatacgatggtttgcctgTTAAGGAGCTATCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194453 lncRNA downstream 45812 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 564520 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 699529 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 744095 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 805395 9331343 ~ 9332033 (-) True G154235
TU194465 lncRNA upstream 5558 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 404609 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 437045 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 551223 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 599619 10738544 ~ 10742848 (-) False AMCG00005839
AMCG00005931 mRNA downstream 13543 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005933 mRNA downstream 37912 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005801 mRNA downstream 56219 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005800 mRNA downstream 71978 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 190732 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005930 mRNA upstream 48687 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005932 mRNA upstream 90943 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 156674 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005849 mRNA upstream 216111 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005848 mRNA upstream 235498 10374423 ~ 10377678 (-) True AMCG00005848
TU194289 other downstream 702488 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1044855 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2012743 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2136088 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2349107 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 176455 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 176455 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 704916 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 767370 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 771591 10910516 ~ 10912745 (-) True G154677

Expression Profile