RNA id: TU194465


Basic Information

Item Value
RNA id TU194465
length 449
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G154400
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10144483 ~ 10144931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactacagTACTAGAGTGTATGTAGTGGTGAAGAACTAAATTCAATATTgctagatacatttcacattcctagagttttaaagcttctctgttactctttggacctggCAATGGCTGACACAGTCTCACTCAACAGTATAGtttatttctctcatttcaaataaGCTATCTGTAAGgctctgcattctgttgttgccctgttgtttaacaaaacttgtGTTAGCATCAttgaccaagaggttattcattcataaagtctatatagtatgtaatttaaatgtctcttgttaatttgcttagtaagcttgtttgatccaatcaagaaggaaagaactgtcttctctgtcttgGAACACAACCCATATAAAATAGCAAATGTAACGTAGAATTGTtgagactgtctgaggaaacttctCCTGTCAGGCTCCCGTACAGCTGCtggaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194464 lncRNA downstream 5558 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 52867 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 571575 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 706584 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 751150 9343755 ~ 9393333 (-) True G154237
TU194684 lncRNA upstream 398603 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 431039 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 545217 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 593613 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 657633 10802564 ~ 10818716 (-) True G154675
AMCG00005931 mRNA downstream 20598 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005933 mRNA downstream 44967 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005801 mRNA downstream 63274 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005800 mRNA downstream 79033 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 197787 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005930 mRNA upstream 42681 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005932 mRNA upstream 84937 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 150668 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005849 mRNA upstream 210105 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005848 mRNA upstream 229492 10374423 ~ 10377678 (-) True AMCG00005848
TU194289 other downstream 709543 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1051910 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2019798 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2143143 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2356162 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 170449 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 170449 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 698910 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 761364 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 765585 10910516 ~ 10912745 (-) True G154677

Expression Profile