RNA id: TU194527


Basic Information

Item Value
RNA id TU194527
length 787
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G154447
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10285514 ~ 10332094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGGTCAGTTCAACACTGTCTCCTCtcacccccctcctcccttcAGGGCAGTTCTACCACGGCCTGAGTTTCCAGGTCAGTGAGCTGCGGTCCGGAGAGACGTCTGACAAGCCGGATGCCACCATGCTGGTGAAGGGACAGCATCTCACTGTCACCAGGGGCTGGCAGAGAGACTTCCGCACAGACGTGAAGAACGGACAGGAAGTTGCCTGTTGGTTTGTCCACAACAATGGGACAGGCCTGATCGATGGGACGCACCGAGACTACATCGTCTCTGGCATCTTCAAGACCAGCTAAGACAGTGTGCGTCTTCAGACCTATggataaataaaagctttaaacCTAACACCCTGAGTGCACGCTCTTATATTCTCGGGTGACCACTTCccatgtgttgttttatttttattttttacagatgcatacaaataaatcaatataccATGATTTCTCCCATAAAGAAAAAcgtttaatcattttttcccctcattatattggtttaatattttttctctaagtcactcaaatacattttagccAATAGAGAGGAAATAGAACATAGTATAACATAAATGAGCACAGCGTTTAAAGTGGTTGAAATAATGTGCCAGTATGGAAGCATTTTGCTTCATTGTGATACAAAACGTTTTATGAAATGTTCTCATATTAGGTAGTAATGTGCGCATGAAAATGTGTGTGCGGGGCAGTGTTGTTGAAGTGCCAATCCCCCTTCATCTTTATCTTGTGTTAGCAAGCATGTAAagccaaataaatgtataataaat

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194536 lncRNA upstream 23126 10304218 ~ 10304909 (+) False AMCG00005851
TU194535 lncRNA upstream 24538 10302957 ~ 10303497 (+) True G154451
TU194448 lncRNA upstream 248599 10078307 ~ 10079436 (+) True G154388
TU194391 lncRNA upstream 383892 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 886654 9440493 ~ 9441381 (+) True G154252
TU194560 lncRNA downstream 90907 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA downstream 112068 10441067 ~ 10489854 (+) True G154473
TU194598 lncRNA downstream 194968 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 246980 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 338999 10667998 ~ 10668261 (+) True G154583
AMCG00005851 mRNA upstream 23198 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005929 mRNA upstream 56575 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005927 mRNA upstream 66570 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005928 mRNA upstream 109710 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005934 mRNA upstream 191319 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005820 mRNA downstream 83526 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005819 mRNA downstream 94110 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005817 mRNA downstream 102564 10431563 ~ 10436502 (+) True AMCG00005817
AMCG00005821 mRNA downstream 133836 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005818 mRNA downstream 151211 10480210 ~ 10486749 (+) True AMCG00005818
TU194450 other upstream 240343 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 251533 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 444080 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 738237 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 889766 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 133538 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 141544 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 183505 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 393333 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 584398 10913397 ~ 10915729 (+) True G154636

Expression Profile