RNA id: TU194598


Basic Information

Item Value
RNA id TU194598
length 2059
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G154505
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10523967 ~ 10526052 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAATGGCAGAGCCTGAAGCCGGCTGCGATCATGCTGTTAAAACACTAAATGCCATTATGGGTCTCCTTTATATAAACGTCTCCCTTTCCATACCAGGACACACATGAAGGAGTAGAAGAGCCAAGTTTAAACTTGAATTCAACAGTAAGTCAACCAAAACACTTCAACAAttctaattaaactaaatgaacacGAACACACACCTCTGCTTTGTGATGTAACTGGTGCAGTAGTGAACACTTGGACCCCCGACCCAACAGACCTGTTCTGGGACCAGCCAGCCTCAATGCAACTAAAGCCaaggtcacactacacgaatcctagcccgatttggccctcccGCCAAGTGGCATGCTGTGTCGGAGCTCCCCAAGgcaaaggatttcagatcagtcgtgaAGTGTGTCCCCCTGTTCGTAAGCGATCATGTAGTGTTcgctccttcacgacgcaaaagacaAATTTAGTGAAAGCCAGTCTAAGTGTGAGTTGCCCTCTGTTCtcaaaatcgggtcggattgtagaaatcgtgtagtgtgaccctggCATAACTGGGGGAGCAAATGCCACCCAGGTTCAGCAGGAAAGATACAGTGACCACACAGATCTCCTGCTTAACTGGTCAGGTCACAGTcgccctcctcccctccctgcACCACAGACCCGAGGGAGACAGTAACTGGGCCTCAAGGAAGCACACAAACCAGAgattcatatacatacattatatatagtcaaagtatttatatttgctACATTGATCtattttattactgcactttaTTGCTCTTCTAGCATGTGAGGAAACTCCCACTGCACTCCTCCACAGTATTGTCTCCCGTCAGGAGTGTCTAACCACAGCCTGCTTTAATAGCTCCTGCCTGGACTGAGAGAACCCGCAGCCGGCCTCCCCCTGcaccccactcccactcccactgcCGCAGGGAAACTACTAGAGGGCTCTTGCatctaattaaactaaaaatatatatatggttcaTCTTATGACATAGATCTTTTTGCAAAATGAGTGTACATTTGTGTAGTTTTGGGAAAGAGGCTGGGAAAATGTAatagattttaattaacaaaattcttgcaaagcaaacaaaaccaaagcacCTCAGTGTTTAGACCCAGACATGATTGTAGAGAGATGGCAGGCTGCGGCCTGCTCTCAGAACCACACATCGCAGGCGCGGTATTAACCTACCTCCTCACACCCGAGCATCGTCACTGCAGTCCCATCCCACCAGGCGGGCCGggacagggctgcagtctgagcacCTGAGAGAGAGGCCCTGGCATGGGCCCGCCTGAACATAAACACGTGGAACTATTCTGTTTGCCATTATTAATTcaatcaacaacaaaatcatttcTGCCAATTACTGCTGTCCCTGGacatcactattattattattattatttttgtcatttagctgacgctcctCAGCCCCTCCCCTGCCAGTCCCACAGCCTGGGGCCCCTCTGCCCTGCTGGCTCCTGCTGTCACTACATGGTTGGCATCACTTGGTCTGATCAGAGCTGCTTTTTGCACCCCCCATTACTTTGAACAGCTGGGAGGTATCGATTTCAGTCCCTCAGAGCATGTGTAGCACCGCCACTCCAGCCATGCTGTGAGTGCAGAAGTACAACGGACAAATTAGTATTTCAATTAACACCCCAGTTCAGTAATGGGACAGTGTGTCTGCCTCCCCCGCATAGGAGCAGGACCACGAGCTAGAGAACTGGATGTTGTGTGGGGGGTGACTGTGGCTCCAGGCCCGTCTCCGATGGGGAGTCCCCTCTAAGGAACCACGCCTCGCGTCCAGACCGTCTGCACGGTCAGGGGAGATCCGAACCCCACCGCTCTGCATTCCCCTCATTAGTTccgttatcattattatttttatctgccTTGGTCTCTGTCTGCTGAATTGAGGGGACCGTTATAAACTGCTCATAACcctgtttcttgtttgtttctttgcttatgtacatgtaatatttatgttgttCGTCTCCCAACCAGCTGAAGTAATAAAAGTTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194560 lncRNA upstream 34113 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA upstream 34113 10441067 ~ 10489854 (+) True G154473
TU194520 lncRNA upstream 167723 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 191873 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 194968 10328035 ~ 10328999 (+) True G154447
TU194687 lncRNA downstream 49927 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 141946 10667998 ~ 10668261 (+) True G154583
TU194697 lncRNA downstream 164091 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA downstream 164091 10690143 ~ 10693953 (+) True AMCG00005835
TU194890 lncRNA downstream 471597 10997649 ~ 10999389 (+) True G154722
AMCG00005857 mRNA upstream 136 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005856 mRNA upstream 16675 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005858 mRNA upstream 21145 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005818 mRNA upstream 37218 10480210 ~ 10486749 (+) True AMCG00005818
AMCG00005821 mRNA upstream 54561 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005804 mRNA downstream 89830 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005803 mRNA downstream 100397 10626449 ~ 10633432 (+) True AMCG00005803
AMCG00005835 mRNA downstream 153885 10679937 ~ 10690305 (+) False AMCG00005835
AMCG00005837 mRNA downstream 170725 10696777 ~ 10697001 (+) True AMCG00005837
AMCG00005836 mRNA downstream 174958 10701010 ~ 10712559 (+) True AMCG00005836
TU194591 other upstream 7577 10512504 ~ 10516390 (+) True G154499
TU194578 other upstream 52336 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 55616 10462537 ~ 10468351 (+) False AMCG00005821
TU194450 other upstream 436275 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 447465 10065160 ~ 10076502 (+) False AMCG00005802
TU194711 other downstream 196280 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 387345 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 481492 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 557109 11083161 ~ 11086011 (+) True G154756
TU194985 other downstream 793912 11319964 ~ 11325074 (+) True G154798

Expression Profile